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chipseq_analysis
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BICF
Astrocyte
chipseq_analysis
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d9e3b2b4
Commit
d9e3b2b4
authored
4 years ago
by
Venkat Malladi
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Update documentation and use GTF file.
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!67
Resolve "Rename Plot profile to be consistent with naming"
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d9e3b2b4
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@@ -73,6 +73,7 @@ $ git clone git@git.biohpc.swmed.edu:BICF/Astrocyte/chipseq_analysis.git
9.
Annotate all peaks using ChipSeeker
10.
Calculate Differential Binding Activity with DiffBind (If more than 1 rep in more than 1 experiment)
11.
Use MEME-ChIP to find motifs in original peaks
12.
Plot enrichment of signal around TSS
See
[
FLOWCHART
](
docs/flowchart.pdf
)
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@@ -20,6 +20,7 @@ Report issues to the Bioinformatic Core Facility [BICF](mailto:BICF@UTSouthweste
9.
Annotate all peaks using ChipSeeker
10.
Calculate Differential Binding Activity with DiffBind (If more than 1 rep in more than 1 experiment)
11.
Use MEME-ChIP to find motifs in original peaks
12.
Plot enrichment of signal around TSS
## Workflow Parameters
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workflow/main.nf
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@@ -488,6 +488,7 @@ process plotProfile {
output:
file '*.{png,gz}' into plotProfile
file gtf from gtfFile
when:
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