Commits · publish_1.1.4 · BICF / Astrocyte / cellranger_mkfastq

Apr 26, 2019
- Merge branch 'develop' into 'master' · 4c37ee84
  Gervaise Henry authored 5 years ago
```
Update CHANGELOG.md

See merge request !24
```
  publish_1.1.4
  
  4c37ee84
- Update CHANGELOG.md · 8d02cf38
  Gervaise Henry authored 5 years ago
  
  8d02cf38
- Merge branch 'develop' into 'master' · 4fa4a365
  Gervaise Henry authored 5 years ago
```
Develop

See merge request !23
```
  4fa4a365
- Update CHANGELOG.md · 72d9ac49
  Gervaise Henry authored 5 years ago
  
  72d9ac49
- Update CHANGELOG.md · a5d59d60
  Gervaise Henry authored 5 years ago
  
  a5d59d60
- Merge branch 'develop' into 'master' · 14c35d76
  Gervaise Henry authored 5 years ago
```
Develop

See merge request !21
```
  14c35d76
- Prevent error for ln test files if already exists · 63660318
  Gervaise Henry authored 5 years ago
  
  63660318
- Correct mkdir in CI · c33b5387
  Gervaise Henry authored 5 years ago
  
  c33b5387
- Prevent error if mkdir in CI discovers folder already exists · 0c933402
  Gervaise Henry authored 5 years ago
  
  0c933402
- Merge branch 'develop' into 'master' · 3b899a68
  Gervaise Henry authored 5 years ago
```
Add quotes around paths in case of spaces

See merge request !20
```
  3b899a68
- Add quotes around paths in case of spaces · b7f26684
  Gervaise Henry authored 5 years ago
  
  b7f26684
- Merge branch 'develop' into 'master' · 1e37a630
  Gervaise Henry authored 5 years ago
```
Develop

See merge request !19
```
  1e37a630
- Update CHANGELOG.md · da0674c2
  Gervaise Henry authored 5 years ago
```
Deleted CHANGELOG
```
  da0674c2
- Add CHANGELOG · e0526cc1
  Gervaise Henry authored 5 years ago
  
  e0526cc1
- Add quotes to param submission in CI · 98ef5553
  Gervaise Henry authored 5 years ago
  
  98ef5553
- Add 2FC test to CI · 49a198fe
  Gervaise Henry authored 5 years ago
  
  49a198fe
- Merge branch '13-add.flowcell.to.outputs' into 'develop' · 0204dcb2
  Gervaise Henry authored 5 years ago
```
Resolve "Handle multi-flowcells in fastqc and multiqc"

Closes #13

See merge request !18
```
  0204dcb2
- Report fastqc's from multiple flowcells separate · 3f1278c8
  Gervaise Henry authored 5 years ago
  
  3f1278c8
Apr 25, 2019
- Split version file gen to separate process, run single version/multiqc process · d5ba8a06
  Gervaise Henry authored 5 years ago
  
  d5ba8a06
- Run multiple mkfastq if multiple bcls · 42d035c6
  Gervaise Henry authored 5 years ago
  
  42d035c6
- Merge branch '15-fix.astrocyte.design' into 'develop' · 0889e39c
  Gervaise Henry authored 5 years ago
```
Resolve "Fix astrocyte regex"

Closes #15

See merge request !17
```
  0889e39c
- Remove \. from regex because it failed · fa150f7a
  Gervaise Henry authored 5 years ago
  
  fa150f7a
- Change regex to filter for file type · 417f309f
  Gervaise Henry authored 5 years ago
  
  417f309f
- Merge branch '15-fix.astrocyte.design' into 'develop' · 5857ec5e
  Gervaise Henry authored 5 years ago
```
Fix Astrocyte design file regex

Closes #15

See merge request !16
```
  5857ec5e
- Fix Astrocyte design file regex · 856b4e79
  Gervaise Henry authored 5 years ago
  
  856b4e79
- Get untar to run on multiple bcls · de4aab57
  Gervaise Henry authored 5 years ago
  
  de4aab57
Apr 23, 2019
- Get tagging of fastqc working · 2fc45b33
  Gervaise Henry authored 5 years ago
  
  2fc45b33
Apr 22, 2019
- Try to get qcs for multiple flowcells in different folders · 280c7abf
  Gervaise Henry authored 5 years ago
  
  280c7abf
- Merge branch '14-move.multiqc.config' into 'develop' · ea26d49c
  Gervaise Henry authored 5 years ago
```
Resolve "Change location of multiqc config and name"

Closes #14

See merge request !15
```
  ea26d49c
- Fix config folder · 4dd48f74
  Gervaise Henry authored 5 years ago
  
  4dd48f74
- Move multiqc config · 8e7182f6
  Gervaise Henry authored 5 years ago
  
  8e7182f6
Apr 12, 2019
- Merge branch 'develop' into 'master' · 45100352
  Gervaise Henry authored 5 years ago
```
Develop

See merge request !14
```
  publish_1.0.0
  
  45100352
- Merge branch '12-move.software.report' into 'develop' · 30ca743a
  Gervaise Henry authored 5 years ago
```
Resolve "Move software version report to the bottom"

Closes #12

See merge request !13
```
  30ca743a
- Put custom content at the bottom of the reports · 338bf053
  Gervaise Henry authored 5 years ago
  
  338bf053
- Move software report to bottom · befd5bf5
  Gervaise Henry authored 5 years ago
  
  befd5bf5
- Merge branch 'develop' into 'master' · ecfd11c6
  Gervaise Henry authored 5 years ago
```
Develop

See merge request !12
```
  ecfd11c6
- Update astrocyte_pkg.yml · ed3d36bf
  Gervaise Henry authored 5 years ago
  
  ed3d36bf
- Merge branch '9-split.multiqc' into 'develop' · 474455b0
  Gervaise Henry authored 5 years ago
```
Resolve "Split multiqc fastqc by r1/r2/i1"

Closes #9

See merge request !11
```
  474455b0
- Split fastqc reports by I1,R1,R2 · 1811a23f
  Gervaise Henry authored 5 years ago
  
  1811a23f
- Merge branch '11_fastqcoptimize' into 'develop' · 21c3f273
  Gervaise Henry authored 5 years ago
```
11 fastqcoptimize

See merge request !10
```
  21c3f273