Add 2FC test to CI

.gitlab-ci.yml

@@ -2,8 +2,10 @@ before_script:
   - module load astrocyte
   - module load python/3.6.1-2-anaconda
   - module load nextflow/0.31.1_Ignite
-  - mkdir test_data/simple
-  - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_mkfastq/simple/* test_data/simple/
+  - mkdir test_data/simple1
+  - mkdir test_data/simple2
+  - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_mkfastq/simple1/* test_data/simple1/
+  - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_mkfastq/simple2/* test_data/simple2/
 
 stages:
   - astrocyte
@@ -14,7 +16,12 @@ astrocyte_check:
   script:
   - astrocyte_cli check ../cellranger_mkfastq
 
-simple_test:
+simple_1FC:
   stage: simple
   script:
-  - nextflow run workflow/main.nf --bcl test_data/simple/*.tar.gz --designFile test_data/simple/cellranger-tiny-bcl-simple-1_2_0.csv
+  - nextflow run workflow/main.nf --bcl test_data/simple1/*.tar.gz --designFile test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv
+
+simple_2FC:
+  stage: simple
+  script:
+  - nextflow run workflow/main.nf --bcl test_data/simple2/*.tar.gz --designFile test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv