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Commit 2fc45b33 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Get tagging of fastqc working

parent 280c7abf
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2 merge requests!19Develop,!18Resolve "Handle multi-flowcells in fastqc and multiqc"
......@@ -100,11 +100,12 @@ process mkfastq {
process fastqc {
tag "$bclName"
queue 'super'
publishDir "$outDir/misc/${task.process}", mode: 'copy', pattern: "{*fastqc.zip}"
publishDir "$outDir/misc/${task.process}/$name/$bclName", mode: 'copy', pattern: "{*fastqc.zip}"
module 'fastqc/0.11.5:parallel'
input:
file fastqPaths
val bclName
output:
......@@ -147,9 +148,9 @@ process versions {
process multiqc {
tag "$bclName}"
tag "$name"
queue 'super'
publishDir "$outDir/${task.process}", mode: 'copy'
publishDir "$outDir/${task.process}/$name", mode: 'copy'
module 'multiqc/1.7'
input:
......
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