Merge branch '12-move.software.report' into 'develop'

Resolve "Move software version report to the bottom"

Closes #12

See merge request !13

.gitignore

@@ -310,5 +310,9 @@ report*.html*
 timeline*.html*
 
 *~
+*.tmp
+*.swp
+*.out
+run*.sh
 
 !.gitkeep

workflow/scripts/.multiqc_config.yaml

-top_modules:
-    - 'Software Versions'
-
 module_order:
     - bcl2fastq
     - fastqc:
@@ -21,3 +18,4 @@ module_order:
         target: ''
         path_filters:
             - '*_R2_*fastqc.zip'
+    - custom_content

workflow/scripts/generate_versions.py

@@ -91,7 +91,7 @@ def main():
     # Dump to YAML
     print(
         '''
-        id: 'Software Versions'
+        id: 'software_versions'
         section_name: 'Software Versions'
         section_href: 'https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq/'
         plot_type: 'html'