Commits · c159bf796ebc6775fc4a5a98a1490bb514066ace · BICF / Astrocyte / cellranger_mkfastq

Jul 31, 2019
- Update Cellranger to version 3.1.0 · 5b73fc02
  Jeremy Mathews authored 5 years ago
  
  5b73fc02
Jul 22, 2019
- restructre pytests · 8ebc05b9
  Jeremy Mathews authored 5 years ago
  
  8ebc05b9
- remove wildcards from all paths · 6dd85b3e
  Jeremy Mathews authored 5 years ago
  
  6dd85b3e
- hardcode check design test · 908ca9d8
  Jeremy Mathews authored 5 years ago
  
  908ca9d8
- comment out design · f761cc15
  Jeremy Mathews authored 5 years ago
  
  f761cc15
- make literal · e981dbff
  Jeremy Mathews authored 5 years ago
  
  e981dbff
- design · d2faf5be
  Jeremy Mathews authored 5 years ago
  
  d2faf5be
- change test design · 267a4004
  Jeremy Mathews authored 5 years ago
  
  267a4004
- print test · 9472e0a1
  Jeremy Mathews authored 5 years ago
  
  9472e0a1
- fix output file check to astrocyte output · 3f7623d5
  Jeremy Mathews authored 5 years ago
  
  3f7623d5
- update output path check design test · 8e0a9468
  Jeremy Mathews authored 5 years ago
  
  8e0a9468
- Update test files · fef9d32e
  Jeremy Mathews authored 5 years ago
  
  fef9d32e
- Add tests for all sections of pipeline · 6955255a
  Jeremy Mathews authored 5 years ago
  
  6955255a
Jul 19, 2019
- fix syntax · 83688779
  Jeremy Mathews authored 5 years ago
  
  83688779
- Fix paths · 0c7feead
  Jeremy Mathews authored 5 years ago
  
  0c7feead
- Add pytest · 6cef4fe6
  Jeremy Mathews authored 5 years ago
  
  6cef4fe6
Jul 10, 2019
- fixed style · a830a0c9
  Holly Ruess authored 5 years ago
  
  a830a0c9
Jul 08, 2019
- Minor formatting · 42ddd6e9
  Gervaise Henry authored 5 years ago
  
  42ddd6e9
- Create Design file for count with 1 bcl input · 6dcc8372
  Jeremy Mathews authored 5 years ago
  
  6dcc8372
Jun 28, 2019
- Add bicf logo and don't add multiqc raw data · 4d1f21d7
  Gervaise Henry authored 5 years ago
  
  4d1f21d7
- Change some formatting to match cellranger_count · 61515526
  Gervaise Henry authored 5 years ago
  
  61515526
Jun 26, 2019
- Fix ordering on multiqc output · bbaf96fe
  Jeremy Mathews authored 5 years ago
  
  bbaf96fe
Jun 25, 2019
- Add References Reort and Markdown file; Update README file · 9a523177
  Jeremy Mathews authored 5 years ago
  
  9a523177
May 24, 2019
- File and Folder Space Check · 094964d5
  Jeremy Mathews authored 5 years ago
  
  094964d5
- Updated Bash Script · 8f70391a
  Jeremy Mathews authored 5 years ago
  
  8f70391a
- Move untarBCl to Script · 010ddbe9
  Jeremy Mathews authored 5 years ago
  
  010ddbe9
May 21, 2019
- Check unTar String Directory for spaces · e94c5b4a
  Jeremy Mathews authored 5 years ago
  
  e94c5b4a
May 20, 2019
- Directory Check · 5e3a85b8
  Jeremy Mathews authored 5 years ago
  
  5e3a85b8
- Check Directory Path in mkfastq · f67d9fe6
  Jeremy Mathews authored 5 years ago
  
  f67d9fe6
May 17, 2019
- Test Folder Check with file rename and directory exit · f513e97a
  Jeremy Mathews authored 5 years ago
  
  f513e97a
- Collapse Folder and File Names · ea391ce2
  Jeremy Mathews authored 5 years ago
  
  ea391ce2
Apr 26, 2019
- Add quotes around paths in case of spaces · b7f26684
  Gervaise Henry authored 6 years ago
  
  b7f26684
- Report fastqc's from multiple flowcells separate · 3f1278c8
  Gervaise Henry authored 6 years ago
  
  3f1278c8
Apr 25, 2019
- Split version file gen to separate process, run single version/multiqc process · d5ba8a06
  Gervaise Henry authored 6 years ago
  
  d5ba8a06
- Run multiple mkfastq if multiple bcls · 42d035c6
  Gervaise Henry authored 6 years ago
  
  42d035c6
- Get untar to run on multiple bcls · de4aab57
  Gervaise Henry authored 6 years ago
  
  de4aab57
Apr 23, 2019
- Get tagging of fastqc working · 2fc45b33
  Gervaise Henry authored 6 years ago
  
  2fc45b33
Apr 22, 2019
- Try to get qcs for multiple flowcells in different folders · 280c7abf
  Gervaise Henry authored 6 years ago
  
  280c7abf
- Fix config folder · 4dd48f74
  Gervaise Henry authored 6 years ago
  
  4dd48f74
- Move multiqc config · 8e7182f6
  Gervaise Henry authored 6 years ago
  
  8e7182f6