Commits · 98ef5553f65a1b4fb1086360f3327a1e2b3354db · BICF / Astrocyte / cellranger_mkfastq

Apr 26, 2019
- Add quotes to param submission in CI · 98ef5553
  Gervaise Henry authored 6 years ago
  
  98ef5553
- Add 2FC test to CI · 49a198fe
  Gervaise Henry authored 6 years ago
  
  49a198fe
- Merge branch '13-add.flowcell.to.outputs' into 'develop' · 0204dcb2
  Gervaise Henry authored 6 years ago
```
Resolve "Handle multi-flowcells in fastqc and multiqc"

Closes #13

See merge request !18
```
  0204dcb2
- Report fastqc's from multiple flowcells separate · 3f1278c8
  Gervaise Henry authored 6 years ago
  
  3f1278c8
Apr 25, 2019
- Split version file gen to separate process, run single version/multiqc process · d5ba8a06
  Gervaise Henry authored 6 years ago
  
  d5ba8a06
- Run multiple mkfastq if multiple bcls · 42d035c6
  Gervaise Henry authored 6 years ago
  
  42d035c6
- Merge branch '15-fix.astrocyte.design' into 'develop' · 0889e39c
  Gervaise Henry authored 6 years ago
```
Resolve "Fix astrocyte regex"

Closes #15

See merge request !17
```
  0889e39c
- Remove \. from regex because it failed · fa150f7a
  Gervaise Henry authored 6 years ago
  
  fa150f7a
- Change regex to filter for file type · 417f309f
  Gervaise Henry authored 6 years ago
  
  417f309f
- Merge branch '15-fix.astrocyte.design' into 'develop' · 5857ec5e
  Gervaise Henry authored 6 years ago
```
Fix Astrocyte design file regex

Closes #15

See merge request !16
```
  5857ec5e
- Fix Astrocyte design file regex · 856b4e79
  Gervaise Henry authored 6 years ago
  
  856b4e79
- Get untar to run on multiple bcls · de4aab57
  Gervaise Henry authored 6 years ago
  
  de4aab57
Apr 23, 2019
- Get tagging of fastqc working · 2fc45b33
  Gervaise Henry authored 6 years ago
  
  2fc45b33
Apr 22, 2019
- Try to get qcs for multiple flowcells in different folders · 280c7abf
  Gervaise Henry authored 6 years ago
  
  280c7abf
- Merge branch '14-move.multiqc.config' into 'develop' · ea26d49c
  Gervaise Henry authored 6 years ago
```
Resolve "Change location of multiqc config and name"

Closes #14

See merge request !15
```
  ea26d49c
- Fix config folder · 4dd48f74
  Gervaise Henry authored 6 years ago
  
  4dd48f74
- Move multiqc config · 8e7182f6
  Gervaise Henry authored 6 years ago
  
  8e7182f6
Apr 12, 2019
- Merge branch '12-move.software.report' into 'develop' · 30ca743a
  Gervaise Henry authored 6 years ago
```
Resolve "Move software version report to the bottom"

Closes #12

See merge request !13
```
  30ca743a
- Put custom content at the bottom of the reports · 338bf053
  Gervaise Henry authored 6 years ago
  
  338bf053
- Move software report to bottom · befd5bf5
  Gervaise Henry authored 6 years ago
  
  befd5bf5
- Update astrocyte_pkg.yml · ed3d36bf
  Gervaise Henry authored 6 years ago
  
  ed3d36bf
- Merge branch '9-split.multiqc' into 'develop' · 474455b0
  Gervaise Henry authored 6 years ago
```
Resolve "Split multiqc fastqc by r1/r2/i1"

Closes #9

See merge request !11
```
  474455b0
- Split fastqc reports by I1,R1,R2 · 1811a23f
  Gervaise Henry authored 6 years ago
  
  1811a23f
- Merge branch '11_fastqcoptimize' into 'develop' · 21c3f273
  Gervaise Henry authored 6 years ago
```
11 fastqcoptimize

See merge request !10
```
  21c3f273
- Fix · 7255080d
  Gervaise Henry authored 6 years ago
  
  7255080d
Apr 11, 2019
- Removed redundant command. · 7a60cbd7
  Jonathan Gesell authored 6 years ago
  
  7a60cbd7
- Updated fastqc for better multithreading, updated module lists. · 2f5a2b47
  Jonathan Gesell authored 6 years ago
  
  2f5a2b47
Apr 10, 2019
- Merge branch '7-documentation' into 'develop' · f448eb64
  Gervaise Henry authored 6 years ago
```
Resolve "Update Documentation"

Closes #7

See merge request !7
```
  f448eb64
- Add qc's to docs · a4c203b0
  Gervaise Henry authored 6 years ago
  
  a4c203b0
- Add back test_data dir · e90a2d17
  Gervaise Henry authored 6 years ago
  
  e90a2d17
- Update docs · 862a479e
  Gervaise Henry authored 6 years ago
  
  862a479e
- Merge branch '6-multiqc' into 'develop' · a896a72c
  Gervaise Henry authored 6 years ago
```
Resolve "Add MultiQC"

See merge request !6
```
  a896a72c
Apr 09, 2019
- Add run name param · 181c0f05
  Gervaise Henry authored 6 years ago
  
  181c0f05
- Add process tags · 852500e6
  Gervaise Henry authored 6 years ago
  
  852500e6
Apr 08, 2019
- Rejigger process queues · 919ebd3d
  Gervaise Henry authored 6 years ago
  
  919ebd3d
- Remove premature reference script and set fastq process to use super queue · 0ad4bb2a
  Gervaise Henry authored 6 years ago
  
  0ad4bb2a
- Change report order · 00b66d4c
  Gervaise Henry authored 6 years ago
  
  00b66d4c
- Add custom multiqc report yaml with software versions · 42e5fcf0
  Gervaise Henry authored 6 years ago
  
  42e5fcf0
Apr 07, 2019
- Improve input file import of fastqc process · 9fe4abf2
  Gervaise Henry authored 6 years ago
  
  9fe4abf2
- Add fastqc (needs input file optimization) · 7b474afc
  Gervaise Henry authored 6 years ago
  
  7b474afc