Commits · 8cdd120851c1c4b34107512402db188e912f5d6d · BICF / Astrocyte / cellranger_mkfastq

Aug 14, 2019
- Update fastqc.sh · 8cdd1208
  Gervaise Henry authored 5 years ago
  
  8cdd1208
- Update countDesign.sh · 751b83f2
  Gervaise Henry authored 5 years ago
  
  751b83f2
- Add LICENSE · ff73fd37
  Gervaise Henry authored 5 years ago
  
  ff73fd37
Aug 05, 2019
- Merge branch '29-CountDesign' into 'develop' · be778768
  Gervaise Henry authored 5 years ago
```
Resolve "Fix CountDesign"

Closes #29

See merge request !44
```
  be778768
- remove except from CI · 90cc2803
  Jeremy Mathews authored 5 years ago
  
  90cc2803
- update .gitlab CI · 0e6e8806
  Jeremy Mathews authored 5 years ago
  
  0e6e8806
- Fix countDesign · 1fd6d350
  Jeremy Mathews authored 5 years ago
  
  1fd6d350
Jul 31, 2019
- Update .gitlab-ci.yml · 6dda9f06
  Gervaise Henry authored 5 years ago
  
  6dda9f06
- Update CHANGELOG.md · 967807b0
  Gervaise Henry authored 5 years ago
  
  967807b0
- Update CHANGELOG.md · 7f742040
  Gervaise Henry authored 5 years ago
  
  7f742040
- Merge branch '28-md_CI' into 'develop' · d6227773
  Gervaise Henry authored 5 years ago
```
Resolve "Exclude changes in *.md for CI"

Closes #28

See merge request !43
```
  d6227773
- md test · 0dca6cde
  Jeremy Mathews authored 5 years ago
  
  0dca6cde
- add refs to except in CI yml · 4986fa6e
  Jeremy Mathews authored 5 years ago
  
  4986fa6e
- fix yml CI · d79a2033
  Jeremy Mathews authored 5 years ago
  
  d79a2033
- Add Exceptions for md files · fe34bd57
  Jeremy Mathews authored 5 years ago
  
  fe34bd57
- Update CHANGELOG.md · 5d444a10
  Gervaise Henry authored 5 years ago
  
  5d444a10
- Merge branch '26-v3.1.0' into 'develop' · c066be2d
  Gervaise Henry authored 5 years ago
```
Resolve "Change to cellranger v 3.1.0"

Closes #26 and #27

See merge request !42
```
  c066be2d
- update paths · 1474eb3e
  Jeremy Mathews authored 5 years ago
  
  1474eb3e
- change paths to astrocyte output · c159bf79
  Jeremy Mathews authored 5 years ago
  
  c159bf79
- update paths in artifacts · df3cceba
  Jeremy Mathews authored 5 years ago
  
  df3cceba
- add multiqc report to CI artifacts · 33da86ef
  Jeremy Mathews authored 5 years ago
  
  33da86ef
- Update Cellranger to version 3.1.0 · 5b73fc02
  Jeremy Mathews authored 5 years ago
  
  5b73fc02
Jul 24, 2019
- Update CHANGELOG.md · 151db2cf
  Gervaise Henry authored 5 years ago
  
  151db2cf
Jul 23, 2019
- Update .gitlab-ci.yml · 2a53502c
  Gervaise Henry authored 5 years ago
  
  2a53502c
Jul 22, 2019
- Update CHANGELOG.md · 71b3464e
  Gervaise Henry authored 5 years ago
  
  71b3464e
- Merge branch '25-AddPytestCI' into 'develop' · a20066fe
  Gervaise Henry authored 5 years ago
```
Resolve "Add pytest to CI"

Closes #25

See merge request !40
```
  a20066fe
- restructre pytests · 8ebc05b9
  Jeremy Mathews authored 5 years ago
  
  8ebc05b9
- remove wildcards from all paths · 6dd85b3e
  Jeremy Mathews authored 5 years ago
  
  6dd85b3e
- hardcode check design test · 908ca9d8
  Jeremy Mathews authored 5 years ago
  
  908ca9d8
- install pip · 42954333
  Jeremy Mathews authored 5 years ago
  
  42954333
- comment out design · f761cc15
  Jeremy Mathews authored 5 years ago
  
  f761cc15
- make literal · e981dbff
  Jeremy Mathews authored 5 years ago
  
  e981dbff
- design · d2faf5be
  Jeremy Mathews authored 5 years ago
  
  d2faf5be
- change test design · 267a4004
  Jeremy Mathews authored 5 years ago
  
  267a4004
- print test · 9472e0a1
  Jeremy Mathews authored 5 years ago
  
  9472e0a1
- fix output file check to astrocyte output · 3f7623d5
  Jeremy Mathews authored 5 years ago
  
  3f7623d5
- update output path check design test · 8e0a9468
  Jeremy Mathews authored 5 years ago
  
  8e0a9468
- Update test files · fef9d32e
  Jeremy Mathews authored 5 years ago
  
  fef9d32e
- Add tests for all sections of pipeline · 6955255a
  Jeremy Mathews authored 5 years ago
  
  6955255a
Jul 19, 2019
- fix syntax · 83688779
  Jeremy Mathews authored 5 years ago
  
  83688779