Skip to content
Snippets Groups Projects
Commit d6227773 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
Browse files

Merge branch '28-md_CI' into 'develop'

Resolve "Exclude changes in *.md for CI"

Closes #28

See merge request !43
parents 5d444a10 0dca6cde
Branches
Tags
2 merge requests!45Develop,!43Resolve "Exclude changes in *.md for CI"
...@@ -14,6 +14,9 @@ stages: ...@@ -14,6 +14,9 @@ stages:
astrocyte_check: astrocyte_check:
stage: astrocyte stage: astrocyte
except:
changes:
- "**/*.md"
script: script:
- astrocyte_cli check ../cellranger_mkfastq - astrocyte_cli check ../cellranger_mkfastq
artifacts: artifacts:
...@@ -26,7 +29,10 @@ astrocyte_check: ...@@ -26,7 +29,10 @@ astrocyte_check:
simple_1FC: simple_1FC:
stage: simple stage: simple
except: except:
- tags changes:
- "**/*.md"
refs:
- tags
script: script:
- nextflow run workflow/main.nf --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv" - nextflow run workflow/main.nf --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv"
- pytest -m simple1 - pytest -m simple1
...@@ -44,6 +50,9 @@ simple_1FC: ...@@ -44,6 +50,9 @@ simple_1FC:
simple_2FC: simple_2FC:
stage: simple stage: simple
except:
changes:
- "**/*.md"
script: script:
- nextflow run workflow/main.nf --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv" - nextflow run workflow/main.nf --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv"
- pytest -m simple2 - pytest -m simple2
......
...@@ -4,6 +4,7 @@ ...@@ -4,6 +4,7 @@
**Background** **Background**
* Add CI artifacts * Add CI artifacts
* Add Except md to CI
*Known Bugs* *Known Bugs*
* cellranger mkfastq will not accept spaces in path for run param even if quoted, issue raised on 10XGenomics/cellranger github issue [#31](https://github.com/10XGenomics/cellranger/issues/31) * cellranger mkfastq will not accept spaces in path for run param even if quoted, issue raised on 10XGenomics/cellranger github issue [#31](https://github.com/10XGenomics/cellranger/issues/31)
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment