Commits · e0ada3dabb1bbbb6303074f9fa92272ac7ec2afa · BICF / Astrocyte / cellranger_count

Mar 05, 2019
- Fix indent in .gitlab-ci.yml · e0ada3da
  Gervaise Henry authored 6 years ago
  
  e0ada3da
- Link design file from testdata for CI · 68345f57
  Gervaise Henry authored 6 years ago
  
  68345f57
- Merge branch '4-output.folder' into 'develop' · 6cb1be4d
  Gervaise Henry authored 6 years ago
```
Resolve "Create output directory option"

Closes #4

See merge request !11
```
  6cb1be4d
- Add cli parameter option for output folder to address #4 · 8fc88d18
  Gervaise Henry authored 6 years ago
  
  8fc88d18
Mar 04, 2019
- Update gitignore · 6905cdca
  Gervaise Henry authored 6 years ago
  
  6905cdca
- Merge branch '7-fix.config.mem' into 'develop' · 6d12da60
  Gervaise Henry authored 6 years ago
```
Resolve "Fix config file"

Closes #7

See merge request !10
```
  6d12da60
- Merge branch '2-ref.genome.folder' into 'develop' · 5db938dc
  Gervaise Henry authored 6 years ago
```
Resolve "Remove reference genome full folder"

Closes #2

See merge request !9
```
  5db938dc
- Make reference folder follow standard to fix #2 · 3d24ed7e
  Gervaise Henry authored 6 years ago
  
  3d24ed7e
- Add minimum memory for cellranger count to 120GB to fix #7 · 9b8ae1b3
  Gervaise Henry authored 6 years ago
  
  9b8ae1b3
- Merge branch '2-ref.genome.folder' into 'develop' · e944001c
  Gervaise Henry authored 6 years ago
```
Resolve "Remove reference genome full folder"

Closes #2

See merge request !8
```
  e944001c
- Remove the full folder for references to fix #2 · 8aac15b4
  Gervaise Henry authored 6 years ago
  
  8aac15b4
- Merge branch '9-cellranger_ref3.0.0' into 'develop' · 2c16bfba
  Gervaise Henry authored 6 years ago
```
Resolve "Add cellranger references version 3.0.0 as options"

Closes #9

See merge request !7
```
  2c16bfba
- Merge branch 'develop' into '9-cellranger_ref3.0.0' · 0408200d
  Gervaise Henry authored 6 years ago
```
Fix cellranger version variable type

See merge request !6
```
  0408200d
- Merge branch '8-cellranger3.0.2' into 'develop' · 89f02a93
  Gervaise Henry authored 6 years ago
```
Resolve "Add cellranger 3.0.2 as option"

Closes #8

See merge request !5
```
  89f02a93
- Change version variable to string to fix #8 · 517ccbe9
  Gervaise Henry authored 6 years ago
  
  517ccbe9
- Add reference version 3.0.0 to address #9 · b131fbed
  Gervaise Henry authored 6 years ago
  
  b131fbed
- Merge branch '8-cellranger3.0.2' into 'develop' · 0ecff9bd
  Gervaise Henry authored 6 years ago
```
Resolve "Add cellranger 3.0.2 as option"

Closes #8

See merge request !4
```
  0ecff9bd
- Add 3.0.2 as a param option in astrocyte-pkg.yml, main.nf and biohpc.config to address #8 · fd8f3ac6
  Gervaise Henry authored 6 years ago
  
  fd8f3ac6
Feb 07, 2019
- Merge branch '1-cellranger3.0.1' into 'develop' · 1a425310
  Gervaise Henry authored 6 years ago
```
Resolve "Add cellranger v3.0.1"

Closes #1

See merge request !3
```
  1a425310
- Add params.version to main.nf to complete #1 · 23282d4e
  Gervaise Henry authored 6 years ago
  
  23282d4e
- Merge branch '1-cellranger3.0.1' into 'develop' · c9486db9
  Gervaise Henry authored 6 years ago
```
Resolve "Add cellranger v3.0.1"

Closes #1

See merge request !2
```
  c9486db9
- Implement VM cellranger version handling for #1 · bea0bb6d
  Gervaise Henry authored 6 years ago
  
  bea0bb6d
- Merge branch 'develop' into '1-cellranger3.0.1' · 3806d914
  Gervaise Henry authored 6 years ago
```
Merge hotfix into branch

See merge request !1
```
  3806d914
- Fixes design file overwrite #6 · 58df1814
  Gervaise Henry authored 6 years ago
  
  58df1814
Sep 11, 2018
- Embed module load cellranger into if/then/else · a2733bff
  Gervaise Henry authored 6 years ago
  
  a2733bff
- Point transcriptome to ./ · 2fb61286
  Gervaise Henry authored 6 years ago
  
  2fb61286
Sep 07, 2018
- Fix designFile location passage to checkDesignFile process · 01a09551
  Gervaise Henry authored 6 years ago
  
  01a09551
- Hardwire ref genome locations into astrocyte yml · 2ada067d
  Gervaise Henry authored 6 years ago
  
  2ada067d
- Fix debug output for genomes · 5f3b547d
  Gervaise Henry authored 6 years ago
  
  5f3b547d
- Add more report for genome fail · ed43083f
  Gervaise Henry authored 6 years ago
  
  ed43083f
- Revert and add outputs for genome param and ref to error exit output · bf96062e
  Gervaise Henry authored 6 years ago
  
  bf96062e
- Revert genomes changes and try using {} · ee5e2fd6
  Gervaise Henry authored 6 years ago
  
  ee5e2fd6
Sep 05, 2018
- Update main.nf · b7c95b73
  Gervaise Henry authored 6 years ago
  
  b7c95b73
- Update main.nf · 30d514f5
  Gervaise Henry authored 6 years ago
  
  30d514f5
Sep 04, 2018
- Try changing ref variable name · 17b6ab47
  Gervaise Henry authored 6 years ago
  
  17b6ab47
- Fix astrocyte yml workflowname · 6682648e
  Gervaise Henry authored 6 years ago
  
  6682648e
- Fix astrocyte yml · 9ca6e375
  Gervaise Henry authored 6 years ago
  
  9ca6e375
Sep 01, 2018
- Fix force-cells · d65e96f9
  Gervaise Henry authored 6 years ago
  
  d65e96f9
- Fix ci.yml · f52363f6
  Gervaise Henry authored 6 years ago
  
  f52363f6
- Initial commit · db87d753
  Gervaise Henry authored 6 years ago
  
  db87d753