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Commit bf96062e authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Revert and add outputs for genome param and ref to error exit output

parent ee5e2fd6
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Pipeline #2339 failed with stage
......@@ -8,7 +8,7 @@ params.fastq = "$baseDir/../test_data/*.fastq.gz"
params.designFile = "$baseDir/../test_data/design.csv"
params.genome = 'GRCh38'
params.genomes = []
params.ref = params.genome ? params.genomes[ ${params.genome} ].ref ?: false : false
params.ref = params.genome ? params.genomes[ params.genome ].ref ?: false : false
params.expectCells = 10000
params.forceCells = 0
......@@ -18,7 +18,7 @@ if( params.ref ){
.fromPath(params.ref)
.ifEmpty { exit 1, "referene not found: ${params.ref}" }
} else {
exit 1, "No reference genome specified."
exit 1, "No reference genome specified. ${params.genome} ${params.ref}"
}
// Define List of Files
......
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