diff --git a/workflow/main.nf b/workflow/main.nf index 96336fa9c749044d3a1490f3b7b87f900fa0b56b..f3f3fcaf6ab874e9b2cbbc05ed676484d54a3c97 100755 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -8,7 +8,7 @@ params.fastq = "$baseDir/../test_data/*.fastq.gz" params.designFile = "$baseDir/../test_data/design.csv" params.genome = 'GRCh38' params.genomes = [] -params.ref = params.genome ? params.genomes[ ${params.genome} ].ref ?: false : false +params.ref = params.genome ? params.genomes[ params.genome ].ref ?: false : false params.expectCells = 10000 params.forceCells = 0 @@ -18,7 +18,7 @@ if( params.ref ){ .fromPath(params.ref) .ifEmpty { exit 1, "referene not found: ${params.ref}" } } else { - exit 1, "No reference genome specified." + exit 1, "No reference genome specified. ${params.genome} ${params.ref}" } // Define List of Files