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BICF
Astrocyte
cellranger_count
Commits
b131fbed
There was a problem fetching the pipeline stages.
Commit
b131fbed
authored
6 years ago
by
Gervaise Henry
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Add reference version 3.0.0 to address
#9
parent
0ecff9bd
2 merge requests
!16
Develop
,
!7
Resolve "Add cellranger references version 3.0.0 as options"
Pipeline
#3135
failed with stage
in 10 seconds
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astrocyte_pkg.yml
+8
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8 additions, 4 deletions
astrocyte_pkg.yml
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astrocyte_pkg.yml
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−
4
View file @
b131fbed
...
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@@ -97,10 +97,14 @@ workflow_parameters:
-
id
:
genome
type
:
select
choices
:
-
[
'
/project/apps_database/cellranger/refdata-cellranger-GRCh38-1.2.0'
,
'
Human
GRCh38'
]
-
[
'
/project/apps_database/cellranger/refdata-cellranger-hg19-1.2.0'
,
'
Human
GRCh37
(hg19)'
]
-
[
'
/project/apps_database/cellranger/refdata-cellranger-mm10-1.2.0'
,
'
Mouse
GRCm38
(mm10)'
]
-
[
'
/project/apps_database/cellranger/refdata-cellranger-hg19_and_mm10-1.2.0'
,
'
Human
GRCh37
(hg19)
+
Mouse
GRCm38
(mm19)'
]
-
[
'
/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0'
,
'
Human
GRCh38
release
93'
]
-
[
'
/project/apps_database/cellranger/refdata-cellranger-GRCh38-1.2.0'
,
'
Human
GRCh38
release
84'
]
-
[
'
/project/apps_database/cellranger/refdata-cellranger-hg19-3.0.0'
,
'
Human
GRCh37
(hg19)
release
87'
]
-
[
'
/project/apps_database/cellranger/refdata-cellranger-hg19-1.2.0'
,
'
Human
GRCh37
(hg19)
release
84'
]
-
[
'
/project/apps_database/cellranger/refdata-cellranger-mm10-3.0.0'
,
'
Mouse
GRCm38
(mm10)
release
93'
]
-
[
'
/project/apps_database/cellranger/refdata-cellranger-mm10-1.2.0'
,
'
Mouse
GRCm38
(mm10)
release
84'
]
-
[
'
/project/apps_database/cellranger/refdata-cellranger-hg19_and_mm10-3.0.0'
,
'
Human
GRCh37
(hg19)
+
Mouse
GRCm38
(mm19)
release
93'
]
-
[
'
/project/apps_database/cellranger/refdata-cellranger-hg19_and_mm10-1.2.0'
,
'
Human
GRCh37
(hg19)
+
Mouse
GRCm38
(mm19)
release
84'
]
-
[
'
/project/apps_database/cellranger/refdata-cellranger-ercc92-1.2.0'
,
'
ERCC.92
Spike-In'
]
required
:
true
description
:
|
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