Merge branch 'develop' into '9-cellranger_ref3.0.0'

Fix cellranger version variable type

See merge request !6

astrocyte_pkg.yml

@@ -130,11 +130,11 @@ workflow_parameters:
 
   - id: version
     type: select
-    default: 3.0.2
+    default: '3.0.2'
     choices:
-      - [ 3.0.2, '3.0.2']
-      - [ 3.0.1, '3.0.1']
-      - [ 2.1.1, '2.1.1']
+      - [ '3.0.2', '3.0.2']
+      - [ '3.0.1', '3.0.1']
+      - [ '2.1.1', '2.1.1']
     required: true
     description: |
       10x cellranger version.

workflow/main.nf

@@ -9,7 +9,7 @@ params.designFile = "$baseDir/../test_data/design.csv"
 params.genome = '/project/apps_database/cellranger/refdata-cellranger-GRCh38-1.2.0'
 params.expectCells = 10000
 params.forceCells = 0
-params.version = 3.0.2
+params.version = '3.0.2'
 
 // Define regular variables
 designLocation = Channel
@@ -90,7 +90,7 @@ process count211 {
   file("**/outs/**") into outPaths211
 
   when:
-  version == 211
+  version == '2.1.1'
 
   script:
   if (forceCells211 == 0){
@@ -121,7 +121,7 @@ process count301 {
   file("**/outs/**") into outPaths301
 
   when:
-  version == 301
+  version == '3.0.1'
 
   script:
   if (forceCells301 == 0){
@@ -152,7 +152,7 @@ process count302 {
   file("**/outs/**") into outPaths302
 
   when:
-  version == 302
+  version == '3.0.2'
 
   script:
   if (forceCells302 == 0){