Merge branch 'develop' into '1-cellranger3.0.1'

Merge hotfix into branch

See merge request !1

workflow/main.nf

@@ -36,7 +36,7 @@ process checkDesignFile {
 
   output:
 
-  file("design.csv") into designPaths
+  file("design.checked.csv") into designPaths
 
   script:
 

workflow/scripts/check_design.py

@@ -100,7 +100,7 @@ def main():
     new_design_df = check_design_headers(design_df)
     check_files(design_df, fastq_df)
 
-    new_design_df.to_csv('design.csv', header=True, sep=',', index=False)
+    new_design_df.to_csv('design.checked.csv', header=True, sep=',', index=False)
 
 if __name__ == '__main__':
     main()