GitLab

An example workflow package for the BioHPC Astrocyte workflow engine.

A vagrant box containing the setup necessary for building singularity images

This is a set of python and R routines for converting imaging and mask information to radiomic features and perform simple classification task.

Data analysis pipeline for preprocessing and reconstruction of data acquired on the iThera MSOT InVision 256-TF imaging device.

A skeleton repo acting as a host registry for various images used in Astrocyte.

An R program to visualize, normalize, and analyze -omics data such as those from microarray, metabolomics and proteomics experiments. Data are supplied as a list or table along with parameter settings, all in an Excel file.

Low-frequency small variants and large deletions detection from mitochondrial DNA deep sequencing experiments.