Commits · 0bdf56d5bdb9252ce418fcf7d0c7bdbcee9ff4a1 · NGS CLIA Lab / process_scripts

17 Apr, 2018 1 commit
- fixed all issues with STAR -- still a crappy aligner nontheless · 0bdf56d5
  Brandi Cantarel authored Apr 17, 2018
  
  0bdf56d5
16 Apr, 2018 1 commit
- adding module load star · 1edf4c95
  Brandi Cantarel authored Apr 16, 2018
  
  1edf4c95
10 Apr, 2018 2 commits
- merge changes rnaseqalign · 291e1c35
  Brandi Cantarel authored Apr 10, 2018
  
  291e1c35
- adding updates for rna · d4013ee3
  Brandi Cantarel authored Apr 10, 2018
  
  d4013ee3
26 Mar, 2018 2 commits
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · 012a37c5
  Brandi Cantarel authored Mar 26, 2018
  
  012a37c5
- update support single-end · b54812cf
  Brandi Cantarel authored Mar 26, 2018
  
  b54812cf
22 Mar, 2018 1 commit
- update umi support rnaseqalign · ba64b4b1
  Brandi Cantarel authored Mar 22, 2018
  
  ba64b4b1
16 Mar, 2018 1 commit
- fix typos dnaseqalign cnvkit · 240f711b
  Brandi Cantarel authored Mar 16, 2018
  
  240f711b
12 Mar, 2018 2 commits
- update db location · b6d2f689
  Brandi Cantarel authored Mar 12, 2018
  
  b6d2f689
- add updates dnaseq · 5a098a61
  Brandi Cantarel authored Mar 12, 2018
  
  5a098a61
09 Mar, 2018 1 commit
- update annot dbs · ae56c421
  Brandi Cantarel authored Mar 09, 2018
  
  ae56c421
06 Mar, 2018 1 commit
- location change clinseqfiles · 93333bf7
  Brandi Cantarel authored Mar 06, 2018
  
  93333bf7
05 Mar, 2018 1 commit
- java compatibility problem (snpEff uses 8) others use 7 · e066daaa
  Brandi Cantarel authored Mar 05, 2018
  
  e066daaa
02 Mar, 2018 4 commits
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · 47d58a2e
  Brandi Cantarel authored Mar 02, 2018
  
  47d58a2e
- update somaticvc.pl · 2c0d9ac2
  Brandi Cantarel authored Mar 02, 2018
  
  2c0d9ac2
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · 8b7a9d27
  Brandi Cantarel authored Mar 02, 2018
  
  8b7a9d27
- update somatic_vcf.sh · 5d1e29c6
  Brandi Cantarel authored Mar 02, 2018
  
  5d1e29c6
28 Feb, 2018 1 commit
- update cnv kit filter · f29af901
  Brandi Cantarel authored Feb 28, 2018
  
  f29af901
24 Feb, 2018 1 commit
- adding updates formatting · 4fe8bcaf
  Brandi Cantarel authored Feb 24, 2018
  
  4fe8bcaf
21 Feb, 2018 1 commit
- modify errors in somatic_vc.sh · d8c03da1
  Brandi Cantarel authored Feb 21, 2018
  
  d8c03da1
18 Feb, 2018 1 commit
- fixing platypus union format · 09e71db1
  Brandi Cantarel authored Feb 18, 2018
  
  09e71db1
16 Feb, 2018 1 commit
- updating git repo · 41a31528
  Brandi Cantarel authored Feb 16, 2018
  
  41a31528
14 Feb, 2018 1 commit
- update gatkrunner · 6dd51206
  Brandi Cantarel authored Feb 14, 2018
  
  6dd51206
13 Feb, 2018 1 commit
- adding rnaseq umi · cd2b26a8
  Brandi Cantarel authored Feb 13, 2018
  
  cd2b26a8
11 Feb, 2018 1 commit
- updating for cron and rnaseq · 4b0b4985
  Brandi Cantarel authored Feb 11, 2018
  
  4b0b4985
26 Jan, 2018 1 commit
- updating cnv and union code for umi · a911d9f5
  Brandi Cantarel authored Jan 26, 2018
  
  a911d9f5
25 Jan, 2018 2 commits
- remove parse_cnvkit_table.pl · d43a024e
  Brandi Cantarel authored Jan 25, 2018
  
  d43a024e
- adding cnv and umicode · 2b3b3cfe
  Brandi Cantarel authored Jan 25, 2018
  
  2b3b3cfe
15 Dec, 2017 1 commit
- final bugs somatic/sv workflows · 11a5dfe5
  Brandi Cantarel authored Dec 15, 2017
  
  11a5dfe5
08 Dec, 2017 1 commit
- lancet update · 23e205b9
  Brandi Cantarel authored Dec 08, 2017
  
  23e205b9
06 Dec, 2017 1 commit
- update svcalling for somatic · 91f715b4
  Brandi Cantarel authored Dec 06, 2017
  
  91f715b4
05 Dec, 2017 1 commit
- adding updates to sv and somatic coding · ff59f96d
  Brandi Cantarel authored Dec 05, 2017
  
  ff59f96d
04 Dec, 2017 2 commits
- adding somatic code · b03c7f3f
  Brandi Cantarel authored Dec 04, 2017
  
  b03c7f3f
- somatic union updates · 06eb1972
  Brandi Cantarel authored Dec 04, 2017
  
  06eb1972
28 Nov, 2017 4 commits
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · b9d65518
  Brandi Cantarel authored Nov 28, 2017
  
  b9d65518
- adding space to if · 70fad152
  Brandi Cantarel authored Nov 28, 2017
  
  70fad152
- final bams used for somatic tools · bc4836c1
  Chelsea Raulerson authored Nov 28, 2017
  
  bc4836c1
- fix varscan option · 87e71f14
  Chelsea Raulerson authored Nov 28, 2017
  
  87e71f14
27 Nov, 2017 1 commit
- somatic caller bash script · 3f0afcc5
  Chelsea Raulerson authored Nov 27, 2017
  
  3f0afcc5
20 Nov, 2017 1 commit
- update unioncode platypus bug · 87557454
  Brandi Cantarel authored Nov 20, 2017
  
  87557454