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Commit 8706de70 authored by Brandi Cantarel's avatar Brandi Cantarel
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move modules to is not docker

parent 631876f6
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genect_rnaseq/statanal.sh
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...@@ -28,6 +28,7 @@ fi ...@@ -28,6 +28,7 @@ fi
if [[ -z $isdocker ]] if [[ -z $isdocker ]]
then then
source /etc/profile.d/modules.sh source /etc/profile.d/modules.sh
module load R/3.2.1-intel
fi fi
perl $baseDir/concat_cts.pl -o ./ *.cts perl $baseDir/concat_cts.pl -o ./ *.cts
perl $baseDir/concat_fpkm.pl -o ./ *.fpkm.txt perl $baseDir/concat_fpkm.pl -o ./ *.fpkm.txt
...@@ -40,7 +41,6 @@ then ...@@ -40,7 +41,6 @@ then
touch empty.png touch empty.png
touch bg.rda touch bg.rda
else else
module load R/3.2.1-intel
Rscript $baseDir/dea.R Rscript $baseDir/dea.R
Rscript $baseDir/build_ballgown.R *_stringtie Rscript $baseDir/build_ballgown.R *_stringtie
edgeR=`find ./ -name *.edgeR.txt` edgeR=`find ./ -name *.edgeR.txt`
......
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