diff --git a/genect_rnaseq/statanal.sh b/genect_rnaseq/statanal.sh index cdf3b1cc3bff190c25dc9cd332e9caf2efad399e..dfcb86454b2dd10b564f248edf1000fb6a244258 100644 --- a/genect_rnaseq/statanal.sh +++ b/genect_rnaseq/statanal.sh @@ -28,6 +28,7 @@ fi if [[ -z $isdocker ]] then source /etc/profile.d/modules.sh + module load R/3.2.1-intel fi perl $baseDir/concat_cts.pl -o ./ *.cts perl $baseDir/concat_fpkm.pl -o ./ *.fpkm.txt @@ -40,7 +41,6 @@ then touch empty.png touch bg.rda else - module load R/3.2.1-intel Rscript $baseDir/dea.R Rscript $baseDir/build_ballgown.R *_stringtie edgeR=`find ./ -name *.edgeR.txt`