Merge branch 'master' of git.biohpc.swmed.edu:ngsclialab/process_scripts (631876f6) · Commits · NGS CLIA Lab / process_scripts · GitLab

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NGS CLIA Lab
process_scripts
Commits
631876f6

Commit 631876f6 authored 4 years ago by

Brandi Cantarel

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Merge branch 'master' of git.biohpc.swmed.edu:ngsclialab/process_scripts

parents f888e173 dd30007d

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alignment/abra2.sh 58 additions, 0 deletions

alignment/abra2.sh
alignment/bam2tdf.sh 5 additions, 3 deletions

alignment/bam2tdf.sh
alignment/hisat_genotype.sh 5 additions, 3 deletions

alignment/hisat_genotype.sh
alignment/indexbams.sh 6 additions, 2 deletions

alignment/indexbams.sh
alignment/starfusion.sh 0 additions, 4 deletions

alignment/starfusion.sh
genect_rnaseq/geneabundance.sh 1 addition, 1 deletion

genect_rnaseq/geneabundance.sh
genect_rnaseq/statanal.sh 4 additions, 2 deletions

genect_rnaseq/statanal.sh
obsolete/itdseek.sh 0 additions, 0 deletions

obsolete/itdseek.sh
obsolete/pindel.sh 0 additions, 0 deletions

obsolete/pindel.sh
variants/checkmate.sh 1 addition, 1 deletion

variants/checkmate.sh
variants/filter_pindel.pl 4 additions, 4 deletions

variants/filter_pindel.pl
variants/filter_svaba.pl 12 additions, 16 deletions

variants/filter_svaba.pl
variants/germline_vc.sh 6 additions, 0 deletions

variants/germline_vc.sh
variants/msisensor.sh 4 additions, 2 deletions

variants/msisensor.sh
variants/norm_annot.sh 5 additions, 2 deletions

variants/norm_annot.sh
variants/somatic_vc.sh 1 addition, 1 deletion

variants/somatic_vc.sh
variants/svcalling.sh 12 additions, 5 deletions

variants/svcalling.sh
variants/uni_norm_annot.sh 1 addition, 1 deletion

variants/uni_norm_annot.sh

with 125 additions and 47 deletions

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