From 8706de703b8b5933f89651e5be0312af96cddb7c Mon Sep 17 00:00:00 2001
From: Brandi Cantarel <brandi.cantarel@utsouthwestern.edu>
Date: Wed, 30 Sep 2020 09:54:58 -0500
Subject: [PATCH] move modules to is not docker
---
genect_rnaseq/statanal.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/genect_rnaseq/statanal.sh b/genect_rnaseq/statanal.sh
index cdf3b1c..dfcb864 100644
--- a/genect_rnaseq/statanal.sh
+++ b/genect_rnaseq/statanal.sh
@@ -28,6 +28,7 @@ fi
if [[ -z $isdocker ]]
then
source /etc/profile.d/modules.sh
+ module load R/3.2.1-intel
fi
perl $baseDir/concat_cts.pl -o ./ *.cts
perl $baseDir/concat_fpkm.pl -o ./ *.fpkm.txt
@@ -40,7 +41,6 @@ then
touch empty.png
touch bg.rda
else
- module load R/3.2.1-intel
Rscript $baseDir/dea.R
Rscript $baseDir/build_ballgown.R *_stringtie
edgeR=`find ./ -name *.edgeR.txt`
--
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