Changed link to fix issue with pathing.

16 jobs for !52 with 37-Put-reference-build-into-Snippets in 122 minutes and 8 seconds (queued for 1 minute and 44 seconds)
detached
Status Job ID Name Coverage
  Integration
failed integration_pe #111838

01:18:10

failed integration_se #111842

01:07:50

failed override_fastq #111840

00:34:09

failed override_inputBag #111839

01:51:10

failed override_species #111841

00:39:49

failed integration_pe #111353

01:04:11

failed integration_pe #111348

00:19:46

failed integration_se #111347

01:02:06

failed integration_se #111358

00:57:56

failed override_fastq #111356

00:39:59

failed override_fastq #111350

00:41:40

failed override_inputBag #111354

02:26:34

failed override_inputBag #111349

00:27:21

failed override_species #111357

00:58:26

failed override_species #111351

00:48:58

 
  Consistency
skipped consistency #111352
 
Name Stage Failure
failed
integration_se Integration
Running after_script
Uploading artifacts for failed job
Uploading artifacts...
Runtime platform
arch=amd64 os=linux pid=76895 revision=4c96e5ad version=12.9.0
WARNING: output/qc/: no matching files
WARNING: output/report/: no matching files
WARNING: SE_multiqc_data.json: no matching files
ERROR: No files to upload
ERROR: Job failed: exit status 1
failed
override_species Integration
Cutadapt terminated with exit signal: '256'.
Terminating Trim Galore run, please check error message(s) to get an idea what went wrong...`, size: 1844 (max: 255)
Running after_script
Uploading artifacts for failed job
Uploading artifacts...
Runtime platform
arch=amd64 os=linux pid=62085 revision=4c96e5ad version=12.9.0
WARNING: speciesOverride_PE_multiqc_data.json: no matching files
ERROR: No files to upload
ERROR: Job failed: exit status 1
failed
override_fastq Integration
|| Load annotation file genome.gtf ...                                        ||
Failed to open the annotation file ./annotation/genome.gtf, or its format is incorrect, or it contains no 'exon' features.`, size: 2921 (max: 255)
Running after_script
Uploading artifacts for failed job
Uploading artifacts...
Runtime platform
arch=amd64 os=linux pid=56173 revision=4c96e5ad version=12.9.0
WARNING: fastqOverride_PE_multiqc_data.json: no matching files
ERROR: No files to upload
ERROR: Job failed: exit status 1
failed
override_inputBag Integration
|| Load annotation file genome.gtf ...                                        ||
Failed to open the annotation file ./annotation/genome.gtf, or its format is incorrect, or it contains no 'exon' features.`, size: 2921 (max: 255)
Running after_script
Uploading artifacts for failed job
Uploading artifacts...
Runtime platform
arch=amd64 os=linux pid=85276 revision=4c96e5ad version=12.9.0
WARNING: inputBagOverride_PE_multiqc_data.json: no matching files
ERROR: No files to upload
ERROR: Job failed: exit status 1
failed
integration_pe Integration
Uploading artifacts for failed job
Uploading artifacts...
Runtime platform
arch=amd64 os=linux pid=65892 revision=4c96e5ad version=12.9.0
dag.png: found 1 matching files

WARNING: output/qc/: no matching files
WARNING: output/report/: no matching files
WARNING: PE_multiqc_data.json: no matching files
Uploading artifacts to coordinator... ok
id=111838 responseStatus=201 Created token=LgLFot11
ERROR: Job failed: exit status 1