Changed link to fix issue with pathing.

workflow/rna-seq.nf

@@ -428,7 +428,7 @@ process getRefInfer {
       ln -s "\${references}"/annotation
       ln -s "\${references}"/metadata
       mkdir -p ${refName}/bed
-      ln -sf ./annotation/genome.bed ${refName}/bed/genome.bed
+      ln -sf `readlink -e ./annotation/genome.bed` ${refName}/bed/genome.bed
     #elif [ ${referenceBase} == "s3://bicf-references" ]
     #then
     #  aws s3 cp "\${references}"/hisat2 ./hisat2 --recursive