Merge requests · GUDMAP_RBK / RNA-seq

Merge trains

WIP Resolve "Put reference building script into Snippets" 10 of 12 checklist items completed

!52 · created Dec 07, 2020 by Jonathan Gesell 1.0.0
Test documentation support
- Closed
updated Jan 07, 2021
Add run details to output bag

!51 · created Nov 19, 2020 by Jeremy Mathews 1.0.0
Doing
- Merged
- 7
- Approved
updated Nov 20, 2020
Add back parallel trim step. Moved fastqc step after trim. 5 of 12 checklist items completed

!50 · created Nov 12, 2020 by Venkat Malladi FUTURE Version
To Do enhancement
- Merged
- 8
- Approved
updated Nov 19, 2020
WIP: Resolve "Change yes/no metadata to bool" 3 of 12 checklist items completed

!49 · created Nov 12, 2020 by Venkat Malladi 1.0.0
CodeReview Doing
- Closed
- 1
updated Jan 07, 2021
Resolve "Output tool version to report in multiqc" 7 of 12 checklist items completed

!48 · created Nov 09, 2020 by Venkat Malladi 1.0.0
CI/CD Doing discussion
- Merged
- 6
updated Nov 11, 2020
Test failure. 5 of 10 checklist items completed

!47 · created Oct 31, 2020 by Venkat Malladi 1.0.0
Doing
- Merged
- 2
- Approved
updated Nov 10, 2020
Update consistency checks to be fully in python. 4 of 10 checklist items completed

!46 · created Oct 31, 2020 by Venkat Malladi FUTURE Version
CI/CD To Do
- Merged
- 5
- Approved
updated Nov 11, 2020
Resolve "Move references to GUDMAP/RBK" 8 of 8 checklist items completed

!45 · created Sep 14, 2020 by Gervaise Henry 1.0.0
Doing critical
- Merged
- 3
updated Sep 14, 2020
Develop

!43 · created Aug 27, 2020 by Gervaise Henry 0.0.3 master
updated Aug 27, 2020
0.0.3 10 of 10 checklist items completed

!42 · created Aug 24, 2020 by Gervaise Henry 0.0.3
updated Aug 27, 2020
Develop

!41 · created Aug 20, 2020 by Gervaise Henry v0.0.2 master
updated Aug 20, 2020
Remove.tpm.col 4 of 10 checklist items completed

!40 · created Aug 20, 2020 by Gervaise Henry v0.0.2
updated Aug 20, 2020
v0.0.2

!39 · created Aug 15, 2020 by Gervaise Henry v0.0.2 master
updated Aug 15, 2020
Resolve "Add input bagit to ouput" 4 of 10 checklist items completed

!38 · created Aug 14, 2020 by Gervaise Henry v0.0.2
Doing
updated Aug 15, 2020
v0.0.1

!37 · created Aug 11, 2020 by Gervaise Henry v0.0.1 master
updated Aug 11, 2020
Resolve "process_qc" 6 of 8 checklist items completed

!33 · created Jul 14, 2020 by Gervaise Henry v0.0.1
Doing
updated Jul 15, 2020
Add extra params for tracking

!30 · created Apr 27, 2020 by Gervaise Henry v0.0.1
updated Apr 27, 2020
Track.pipeline 0 of 8 checklist items completed

!29 · created Apr 25, 2020 by Gervaise Henry v0.0.1
enhancement
updated Apr 25, 2020
Resolve "Move inference to start of pipeline" 5 of 6 checklist items completed

!28 · created Apr 22, 2020 by Gervaise Henry v0.0.1
Doing enhancement
- Merged
- 3
updated Apr 24, 2020
Resolve "Chunk bam for parallel tin calculation" 4 of 8 checklist items completed

!26 · created Mar 31, 2020 by Jonathan Gesell v0.0.1
CodeReview discussion enhancement suggestion
- Merged
- 4
updated Apr 07, 2020