Commits · e1bded438a7c42a7eab157a8653feda34b40782f · GUDMAP_RBK / RNA-seq

Nov 19, 2020
- Gervaise made me do it · e1bded43
  Jeremy Mathews authored 4 years ago
  
  e1bded43
- Add run details to output bag · f4e55f71
  Jeremy Mathews authored 4 years ago
  
  f4e55f71
Nov 13, 2020
- Spell correction. · 7e63c86b
  Venkat Malladi authored 4 years ago
  
  7e63c86b
- Update use of includeInputs. · ccfd2d00
  Venkat Malladi authored 4 years ago
  
  ccfd2d00
- Update changes to reflect only the change in order of steps. Fix output files. · c0a39ab8
  Venkat Malladi authored 4 years ago
  
  c0a39ab8
- Remove pigz parllel option. · baf8ba31
  Venkat Malladi authored 4 years ago
  
  baf8ba31
- Update with set for since only 1 variable. Also update pattern to pass files. · 5c9e24e4
  Venkat Malladi authored 4 years ago
  
  5c9e24e4
Nov 12, 2020
- Add back parallel trim step. Moved fastqc step after trim. · 7cf5d610
  Venkat Malladi authored 4 years ago
  
  7cf5d610
Nov 11, 2020
- Fix id in generate versions. · df286d4f
  Venkat Malladi authored 4 years ago
  
  df286d4f
- Fix number of reads that map. · 7950f38f
  Venkat Malladi authored 4 years ago
  
  7950f38f
Nov 10, 2020
- Address typo's and refernces to pipeline. · 43e3a5e0
  Venkat Malladi authored 4 years ago
  
  43e3a5e0
- Fix custom report names for ordering · fb18e579
  Gervaise Henry authored 4 years ago
  
  fb18e579
- Try to get software references working · df529e22
  Gervaise Henry authored 4 years ago
  
  df529e22
- Fix spelling error · c7178e06
  Venkat Malladi authored 4 years ago
  
  c7178e06
- Test software version/references multiqc custom report ordering · 28f53e77
  Gervaise Henry authored 4 years ago
  
  28f53e77
- Fix parsing of json file. · 4a5ac4a9
  Venkat Malladi authored 4 years ago
  
  4a5ac4a9
- Fix consistency check for where it is grabbing. · ded770b2
  Venkat Malladi authored 4 years ago
  
  ded770b2
- Try to fix order. · 8eb6c76d
  Venkat Malladi authored 4 years ago
  
  8eb6c76d
- Update DAG, links and order of sections. · b20d758a
  Venkat Malladi authored 4 years ago
  
  b20d758a
Nov 09, 2020
- Fix regex markdups. · 192da4d6
  Venkat Malladi authored 4 years ago
  
  192da4d6
- Fix regex. · 61468bd9
  Venkat Malladi authored 4 years ago
  
  61468bd9
- Change patterns and changelong. · acc08c89
  Venkat Malladi authored 4 years ago
  
  acc08c89
- Update Markdups. · 435f3889
  Venkat Malladi authored 4 years ago
  
  435f3889
- Fix output for vrsion of nextflow pipeline. · 9763c0a7
  Venkat Malladi authored 4 years ago
  
  9763c0a7
- Fix output file for versions. · be7ae1f2
  Venkat Malladi authored 4 years ago
  
  be7ae1f2
- remove seqtk and update output for stdout. · 08c58f6f
  Venkat Malladi authored 4 years ago
  
  08c58f6f
- Add in software versions and references. · 10cd6a4c
  Venkat Malladi authored 4 years ago
  
  10cd6a4c
Oct 31, 2020
- fix typo in name of pipeline. · cd7534b9
  Venkat Malladi authored 4 years ago
  
  cd7534b9
- Update config for email. · 7cf8c4d2
  Venkat Malladi authored 4 years ago
  
  7cf8c4d2
- Test failure. · b8e8774b
  Venkat Malladi authored 4 years ago
  
  b8e8774b
- Update consistency checks to be fully in python. · 10cbf01b
  Venkat Malladi authored 4 years ago
  
  10cbf01b
Sep 20, 2020
- Reduce species inference cutoffs · c114a629
  Gervaise Henry authored 4 years ago
  
  0.0.4_indev
  
  c114a629
Sep 14, 2020
- Fix elif · deabc9e6
  Gervaise Henry authored 4 years ago
  
  deabc9e6
- Fix datahub specific bed folder move · cb073c1e
  Gervaise Henry authored 4 years ago
  
  cb073c1e
- Auto pep8'd all python code · 2ec44620
  Gervaise Henry authored 4 years ago
  
  2ec44620
- Fix ref move after getRef datahub pull · 296ee453
  Gervaise Henry authored 4 years ago
  
  296ee453
- Add refName to getRef · 719bd9f5
  Gervaise Henry authored 4 years ago
  
  719bd9f5
Sep 13, 2020
- Fix pulled ref mv · b25ebe4e
  Gervaise Henry authored 4 years ago
  
  b25ebe4e
- Move bed only on non ERCC · af4b5d04
  Gervaise Henry authored 4 years ago
  
  af4b5d04
- Add search for ERCC ref · 778044bc
  Gervaise Henry authored 4 years ago
  
  778044bc