Commits · e10247c70f53949119bf98f6280b8a155c4e3447 · GUDMAP_RBK / RNA-seq · GitLab

Snippets Groups Projects

Mar 02, 2021
- Update link from version report to wiki · e10247c7
  Gervaise Henry authored 4 years ago
  
  e10247c7
- Add seqtk to references · 36caf093
  Gervaise Henry authored 4 years ago
  
  36caf093
Feb 23, 2021
- Replace species inference with seqwho · 634fd8a3
  Gervaise Henry authored 4 years ago
  
  634fd8a3
Feb 12, 2021
- Move fastq count before cp · 821a0f05
  Gervaise Henry authored 4 years ago
  
  821a0f05
- Change bdbag to use cookie locally · 785c4858
  Gervaise Henry authored 4 years ago
  
  785c4858
Jan 25, 2021
- Change logic for uploadOutputBag · a503d1e2
  Gervaise Henry authored 4 years ago
  
  a503d1e2
- Add blank mRNA_QC on data fail · f4e88555
  Gervaise Henry authored 4 years ago
  
  f4e88555
- Convert strandedness from yes/no to t/f · a19f61d1
  Gervaise Henry authored 4 years ago
  
  a19f61d1
- Convert strandedness from yes/no to t/f · b9798355
  Gervaise Henry authored 4 years ago
  
  b9798355
Jan 19, 2021
- Fix spike/species asignment for unexpected · 3b99da50
  Gervaise Henry authored 4 years ago
  
  3b99da50
- Fix python else syntac · 00b82094
  Gervaise Henry authored 4 years ago
  
  00b82094
- Further remove parsing restrictions from stranded/spike/species · 29e5ce6b
  Gervaise Henry authored 4 years ago
  
  29e5ce6b
- Remove ability to count fastqs manually from file.csv · f1d40472
  Gervaise Henry authored 4 years ago
  
  f1d40472
- Remove redundant check for multiple fastqs in parse metadata · 538a5074
  Gervaise Henry authored 4 years ago
  
  538a5074
- Allow .R[1,2] and _R[1,2] fastqs · 56d35250
  Gervaise Henry authored 4 years ago
  
  56d35250
- Only used fastq's named correctly · d78689ad
  Gervaise Henry authored 4 years ago
  
  d78689ad
- Allow unexpected values for stranded/spike/species · 8a91ad1b
  Gervaise Henry authored 4 years ago
  
  8a91ad1b
Jan 14, 2021
- Change replicate count for badges to count all replicates that match major version number · b104fc98
  Gervaise Henry authored 4 years ago
  
  b104fc98
Jan 09, 2021
- Change tool version checker for badges to use latest tag · 0611f9e3
  Gervaise Henry authored 4 years ago
  
  0611f9e3
- Add median TIN to mRNA_QC table · ac1c64c4
  Gervaise Henry authored 4 years ago
  
  ac1c64c4
Jan 08, 2021
- Remove split study from repository. Moved to indepednent repository. Close #87 . · c018e25c
  Venkat Malladi authored 4 years ago
  
  c018e25c
- Fix prod server rep count · 578ff495
  Gervaise Henry authored 4 years ago
  
  578ff495
Jan 07, 2021
- Remove reports from config and add to split study · 884ffb3f
  Gervaise Henry authored 4 years ago
  
  884ffb3f
- Reduce split bag concurrent reps to 5 again · 95fc6b1f
  Gervaise Henry authored 4 years ago
  
  95fc6b1f
- Update split study · 09eb019e
  Gervaise Henry authored 4 years ago
  
  09eb019e
- Change error conditional in bdbag fetch to use file · edc05a65
  Gervaise Henry authored 4 years ago
  
  edc05a65
- Change error conditional in bdbag fetch to use file · c4be8ffc
  Gervaise Henry authored 4 years ago
  
  c4be8ffc
- Fix bool in bdbag fetch script · 0f810d4d
  Gervaise Henry authored 4 years ago
  
  0f810d4d
- Fix bool in bdbag fetch script · 9ac7a870
  Gervaise Henry authored 4 years ago
  
  9ac7a870
- Fix bdbag fetch script bool · e7d0d7ec
  Gervaise Henry authored 4 years ago
  
  e7d0d7ec
- Fix bool in bdbag fetch script · 551f4c20
  Gervaise Henry authored 4 years ago
  
  551f4c20
- Fix bool in bdbag fetch script · a235c7b6
  Gervaise Henry authored 4 years ago
  
  a235c7b6
Jan 06, 2021
- Make new inputBag for testing with txt fetch instead of fastq · a2cbcce1
  Gervaise Henry authored 4 years ago
  
  a2cbcce1
- Remove validate structure from test get data · bc08762a
  Gervaise Henry authored 4 years ago
  
  bc08762a
- Move new bdbag fetch code from test · d9d4d35a
  Gervaise Henry authored 4 years ago
  
  d9d4d35a
- Fix bdbag fetch script · e4cd20ad
  Gervaise Henry authored 4 years ago
  
  e4cd20ad
- Fix species error variable · 6269b5af
  Gervaise Henry authored 4 years ago
  
  6269b5af
- add --debug to bdbag fetch · e7c1ae2a
  Gervaise Henry authored 4 years ago
  
  e7c1ae2a
Jan 04, 2021
- Fix parse raw ends · 82ec93f3
  Gervaise Henry authored 4 years ago
  
  82ec93f3
- Pass raw ends · 00ee468b
  Gervaise Henry authored 4 years ago
  
  00ee468b