Commits · da9f10207dd6c985ab25eec33f1729ff1b8c7767 · GUDMAP_RBK / RNA-seq

Jul 22, 2021
- Add license info to pytest scripts · b4f56e92
  Gervaise Henry authored 3 years ago
  
  b4f56e92
Feb 23, 2021
- Replace species inference with seqwho · 634fd8a3
  Gervaise Henry authored 4 years ago
  
  634fd8a3
Jan 27, 2021
- Update pytest to utilize params · 1d912493
  Gervaise Henry authored 4 years ago
  
  1d912493
- Update pytests · a32879db
  Gervaise Henry authored 4 years ago
  
  a32879db
Jan 26, 2021
- Revert SE integration test and server for all integrations · 37bec34c
  Gervaise Henry authored 4 years ago
  
  37bec34c
- Add new py tests for integration and override · ecd4e76f
  Gervaise Henry authored 4 years ago
  
  ecd4e76f
Jan 25, 2021
- Update parseMetadata ci test · c2a7f9b0
  Gervaise Henry authored 4 years ago
  
  c2a7f9b0
Jan 20, 2021
- Add back ends manual to ci unit for parse, but manual · ded8b61b
  Gervaise Henry authored 4 years ago
  
  ded8b61b
- Remove ends manual from parse metadata unit ci · 8f5efffa
  Gervaise Henry authored 4 years ago
  
  8f5efffa
Jan 11, 2021
- Change consistency check to 5% · 8c7d30a6
  Gervaise Henry authored 4 years ago
  
  8c7d30a6
Jan 10, 2021
- Change to assertTrue for experssion. · 0d9eca4a
  Venkat Malladi authored 4 years ago
  
  0d9eca4a
Jan 09, 2021
- Change consistency test to be +/- 1% · b8434976
  Gervaise Henry authored 4 years ago
  
  b8434976
Jan 04, 2021
- Pass raw ends · 00ee468b
  Gervaise Henry authored 4 years ago
  
  00ee468b
Dec 29, 2020
- Update consistency test · 5ce63696
  Gervaise Henry authored 4 years ago
  
  5ce63696
- Update inputs and outputs of make feature counts ci unit test match new format · 656bd8b4
  Gervaise Henry authored 4 years ago
  
  656bd8b4
- Revert to old replicate in tests and ci · d19f4244
  Gervaise Henry authored 4 years ago
  
  d19f4244
- Change to new-new test data · 08094d2c
  Gervaise Henry authored 4 years ago
  
  08094d2c
- Update all tests with new test data rep · df3d4788
  Gervaise Henry authored 4 years ago
  
  df3d4788
Dec 28, 2020
- Fix trim ci unit PE file output test · 6c00f35b
  Gervaise Henry authored 4 years ago
  
  6c00f35b
Dec 17, 2020
- Try and fix CI countData · 8ae1644d
  Gervaise Henry authored 4 years ago
  
  8ae1644d
- Check for old mRNA QC and delete catalog entry · 3aa23f2a
  Gervaise Henry authored 4 years ago
  
  3aa23f2a
Nov 11, 2020
- Fix number of reads that map. · 7950f38f
  Venkat Malladi authored 4 years ago
  
  7950f38f
Nov 10, 2020
- Fix spelling error · c7178e06
  Venkat Malladi authored 4 years ago
  
  c7178e06
- Fix parsing of json file. · 4a5ac4a9
  Venkat Malladi authored 4 years ago
  
  4a5ac4a9
- Fix consistency check for where it is grabbing. · ded770b2
  Venkat Malladi authored 4 years ago
  
  ded770b2
Oct 31, 2020
- Update consistency checks to be fully in python. · 10cbf01b
  Venkat Malladi authored 4 years ago
  
  10cbf01b
Sep 14, 2020
- Auto pep8'd all python code · 2ec44620
  Gervaise Henry authored 4 years ago
  
  2ec44620
Aug 24, 2020
- Update unit test for count #73 · 6e4ad752
  Gervaise Henry authored 4 years ago
  
  6e4ad752
Aug 12, 2020
- Add unit test for outputBag · d65d19ec
  Gervaise Henry authored 4 years ago
  
  d65d19ec
Aug 10, 2020
- Convert string to int for range checking in consistency test · 6341ca53
  Gervaise Henry authored 4 years ago
  
  6341ca53
- Change consistence test from exact match to within 1/100,000 change from expected · ade9acec
  Gervaise Henry authored 4 years ago
  
  ade9acec
Aug 03, 2020
- Extract read length from submitter metadata · e8b92b99
  Gervaise Henry authored 4 years ago
  
  e8b92b99
Jul 31, 2020
- Fix consistency module #27 · 4539dba1
  Gervaise Henry authored 4 years ago
  
  4539dba1
- Move expected assigned into ci.yml #27 · b247d7e4
  Gervaise Henry authored 4 years ago
  
  b247d7e4
- Add consistency tests #27 · 3f55fde3
  Gervaise Henry authored 4 years ago
  
  3f55fde3
Jul 30, 2020
- Test for pytest for parseMetadata: remove unnecessary print #54 · d7b38e88
  Gervaise Henry authored 4 years ago
  
  d7b38e88
- Test for pytest for parseMetadata: supposed to pass #54 · 6fe96e00
  Gervaise Henry authored 4 years ago
  
  6fe96e00
- Test for pytest for parseMetadata: supposed to pass #54 · 22fbaf52
  Gervaise Henry authored 4 years ago
  
  22fbaf52
- Test for pytest for parseMetadata: force pass #54 · 729ee825
  Gervaise Henry authored 4 years ago
  
  729ee825
- Test for pytest for parseMetadata: force pass #54 · 50df04d1
  Gervaise Henry authored 4 years ago
  
  50df04d1