Commits · a6c1385b3adf9be9332d08b82820f4a9ae2ea8a2 · GUDMAP_RBK / RNA-seq

Jan 14, 2020
- Fix biohpc config · a6c1385b
  Gervaise Henry authored 5 years ago
  
  a6c1385b
- Add metadata outputs · 7fa5e438
  Gervaise Henry authored 5 years ago
  
  7fa5e438
- Rename fetched fastqs and fix se/pe · bbcfbd9f
  Gervaise Henry authored 5 years ago
  
  bbcfbd9f
Jan 13, 2020
- Cleanup .nf · d6cee4a5
  Gervaise Henry authored 5 years ago
  
  d6cee4a5
- Add getData deriva-download of bagit · e552d2e6
  Gervaise Henry authored 5 years ago
  
  e552d2e6
- Get deriva download of bagit started · cbba6901
  Gervaise Henry authored 5 years ago
  
  cbba6901
Dec 11, 2019
- Merge branch 'develop' into '15-auto.bagit.download' · 20daf0f9
  Gervaise Henry authored 5 years ago
```
Develop

See merge request !6
```
  20daf0f9
Dec 09, 2019
- Upgrade docker images (gudmaprbkfilexfer and trimgalore) to 1.1 · 0147ece8
  Gervaise Henry authored 5 years ago
  
  0147ece8
Dec 03, 2019
- Merge branch '14-UnitTest' into 'develop' · 9532b01f
  Gervaise Henry authored 5 years ago
```
Resolve "Add Unit Tests for splitData and getData processes"

Closes #14

See merge request !5
```
  9532b01f
- CHANGELOG · 154cdbdd
  Jeremy Mathews authored 5 years ago
  
  154cdbdd
- Fix path in validate statement · 218210f0
  Jeremy Mathews authored 5 years ago
  
  218210f0
- Strip CI to base · 23e761b2
  Jeremy Mathews authored 5 years ago
  
  23e761b2
Nov 25, 2019
- double brackets? · 0e1a3778
  Jeremy Mathews authored 5 years ago
  
  0e1a3778
- double quote? · fac6cc37
  Jeremy Mathews authored 5 years ago
  
  fac6cc37
- Add If stattements to check materialize of bdbag · dc2d6631
  Jeremy Mathews authored 5 years ago
  
  dc2d6631
Nov 20, 2019
- Update gitignore · f343641f
  Gervaise Henry authored 5 years ago
  
  f343641f
Nov 15, 2019
- test failure · daa84862
  Jeremy Mathews authored 5 years ago
  
  daa84862
- fix if statement · e5a88040
  Jeremy Mathews authored 5 years ago
  
  e5a88040
- Chnage assert to If statement · 5f0eda75
  Jeremy Mathews authored 5 years ago
  
  5f0eda75
- Add checksum assertion · b4cc77c9
  Jeremy Mathews authored 5 years ago
  
  b4cc77c9
- Add md5sum check · 9cea75ce
  Jeremy Mathews authored 5 years ago
  
  9cea75ce
- Initial CI · f3704ed3
  Jeremy Mathews authored 5 years ago
  
  f3704ed3
Nov 14, 2019
- Merge branch '3-trimming' into 'develop' · b4be1926
  Gervaise Henry authored 5 years ago
```
Added trimming step using trimGalore and logging.

Closes #3

See merge request !3
```
  b4be1926
Nov 11, 2019
- Update biohpc.config to use new docker repo name. · b00a62fe
  Jonathan Gesell authored 5 years ago
  
  b00a62fe
- Added trimming step using trimGalore and logging. · 3d8cc5f7
  Jonathan Gesell authored 5 years ago
  
  3d8cc5f7
Nov 08, 2019
- Update LICENSE · f6b9f1f2
  Gervaise Henry authored 5 years ago
  
  f6b9f1f2
- Update Merge_Request.md · 9b90db6e
  Gervaise Henry authored 5 years ago
  
  9b90db6e
- Update merge request template · 38ec0ce0
  Gervaise Henry authored 5 years ago
  
  38ec0ce0
- Update biohpc.config · 16e91612
  Jonathan Gesell authored 5 years ago
  
  16e91612
- Add Merge request template · 9ed6b3fd
  Venkat Malladi authored 5 years ago
  
  9ed6b3fd
Nov 06, 2019
- Merge branch 'develop' of https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq into develop · 049251b2
  Gervaise Henry authored 5 years ago
  
  049251b2
Nov 04, 2019
- Update README.md · 4c2d64a4
  Gervaise Henry authored 5 years ago
  
  4c2d64a4
- Resolve merge conflict with pipeline diagram · b29bf6fd
  Gervaise Henry authored 5 years ago
  
  b29bf6fd
- Add template for bug issue · c8794f5d
  Gervaise Henry authored 5 years ago
  
  c8794f5d
Oct 31, 2019
- Add GUDMAP-RBK logo to docs · f105a913
  Gervaise Henry authored 5 years ago
  
  f105a913
- Update pipeline diagram removing aggr · c1fc910d
  Gervaise Henry authored 5 years ago
  
  c1fc910d
- Add GUDMAP-RBK log to docs · 2a6c7aaf
  Gervaise Henry authored 5 years ago
  
  2a6c7aaf
Oct 30, 2019
- Updated for concise output files · c2b05eaa
  Jonathan Gesell authored 5 years ago
  
  c2b05eaa
Oct 29, 2019
- Add back working deriva cookie copy (link) · 9c845c6e
  Gervaise Henry authored 5 years ago
  
  9c845c6e
Oct 28, 2019
- Update pipeline diagram removing aggr · 40a754cf
  Gervaise Henry authored 5 years ago
  
  40a754cf