Commits · a57f7e87d08178306a7500780d68d92b63062948 · GUDMAP_RBK / RNA-seq

Jan 08, 2021
- Add 4hr time limit for all processes (biohpc.config) · a57f7e87
  Gervaise Henry authored 4 years ago
  
  a57f7e87
- Add 1 retry to all processes · e2773496
  Gervaise Henry authored 4 years ago
  
  e2773496
Jan 07, 2021
- Add retries to all data-hub processes for biohpc config · 2d9e2523
  Gervaise Henry authored 4 years ago
  
  2d9e2523
- Move test inputBag export config to test-data · cb8b218d
  Gervaise Henry authored 4 years ago
  
  cb8b218d
Jan 06, 2021
- Make new inputBag for testing with txt fetch instead of fastq · a2cbcce1
  Gervaise Henry authored 4 years ago
  
  a2cbcce1
- Fix species error variable · 6269b5af
  Gervaise Henry authored 4 years ago
  
  6269b5af
Jan 05, 2021
- Alow 1 retry of getData and trimData · 02d4766e
  Gervaise Henry authored 4 years ago
  
  02d4766e
- Fix fail pre execution run · 52b950a6
  Gervaise Henry authored 4 years ago
  
  52b950a6
- Use larger nodes for trim process · a1127c20
  Gervaise Henry authored 4 years ago
  
  a1127c20
Jan 04, 2021
- Add fail process to configs · 68acfa31
  Gervaise Henry authored 4 years ago
  
  68acfa31
Jan 03, 2021
- Add finalize execution run and add new references using bag · 57834f48
  Gervaise Henry authored 4 years ago
  
  57834f48
Dec 29, 2020
- Fix multiqc config for updated version · c6e7db5a
  Gervaise Henry authored 4 years ago
  
  c6e7db5a
Dec 17, 2020
- Change process output bag name to uploadProcessedFiles · b08a7fc5
  Gervaise Henry authored 4 years ago
  
  b08a7fc5
- Update replicate bdbag export config name · 17962772
  Gervaise Henry authored 4 years ago
  
  17962772
- Start changing model · 8792bf4b
  Gervaise Henry authored 4 years ago
  
  8792bf4b
Dec 14, 2020
- Add Output Bag · bdfd5567
  Gervaise Henry authored 4 years ago
  
  bdfd5567
Dec 07, 2020
- Add upload output bag · ab0e4bb6
  Gervaise Henry authored 4 years ago
  
  ab0e4bb6
Dec 05, 2020
- Add upload mRNA QC · e4b99530
  Gervaise Henry authored 4 years ago
  
  e4b99530
Dec 02, 2020
- Add upload execution run · 62790800
  Gervaise Henry authored 4 years ago
  
  62790800
Nov 30, 2020
- Add uploadInputBag · eb83dee4
  Gervaise Henry authored 4 years ago
  
  eb83dee4
Nov 10, 2020
- Fix custom report names for ordering · fb18e579
  Gervaise Henry authored 4 years ago
  
  fb18e579
- Try to get software references working · df529e22
  Gervaise Henry authored 4 years ago
  
  df529e22
- Test software version/references multiqc custom report ordering · 28f53e77
  Gervaise Henry authored 4 years ago
  
  28f53e77
- Try to fix order. · 8eb6c76d
  Venkat Malladi authored 4 years ago
  
  8eb6c76d
- Update DAG, links and order of sections. · b20d758a
  Venkat Malladi authored 4 years ago
  
  b20d758a
Nov 09, 2020
- Add in software versions and references. · 10cd6a4c
  Venkat Malladi authored 4 years ago
  
  10cd6a4c
Sep 13, 2020
- Update datahub ref download · 2f239170
  Gervaise Henry authored 4 years ago
  
  2f239170
Sep 09, 2020
- Add param for ref source · 45593829
  Gervaise Henry authored 4 years ago
  
  45593829
Aug 26, 2020
- Add species override · 03e05d4c
  Gervaise Henry authored 4 years ago
  
  03e05d4c
Aug 25, 2020
- Update multiqc run table for reporting convenience #72 · 579959d8
  Gervaise Henry authored 4 years ago
  
  579959d8
Aug 24, 2020
- Add new custom tables to multiqc #72 · 79f7c244
  Gervaise Henry authored 4 years ago
  
  79f7c244
Aug 13, 2020
- Run getData on super · 2ed81fb6
  Gervaise Henry authored 4 years ago
  
  2ed81fb6
- Fix getRefs to use super · 8ea08743
  Gervaise Henry authored 4 years ago
  
  8ea08743
- Run all getRefs on super (runniung by study overutilizes local) · 4c9dff21
  Gervaise Henry authored 4 years ago
  
  4c9dff21
Aug 12, 2020
- Add inital output bag creation · 49e3be49
  Gervaise Henry authored 4 years ago
  
  49e3be49
Aug 07, 2020
- Add rounding to numbers in multiqc table · 8dd59f38
  Gervaise Henry authored 4 years ago
  
  8dd59f38
Aug 06, 2020
- Fix tin table in multiqc · 66da5252
  Gervaise Henry authored 4 years ago
  
  66da5252
- Remove quotes and colons from multiqc custom tables · e0b3d4bd
  Gervaise Henry authored 4 years ago
  
  e0b3d4bd
- Add quotes to multiqc tables · be4bafc9
  Gervaise Henry authored 4 years ago
  
  be4bafc9
Aug 05, 2020
- Extract raw reads · fa11871a
  Gervaise Henry authored 4 years ago
  
  fa11871a