Move test inputBag export config to test-data

.gitignore

@@ -281,6 +281,7 @@ $RECYCLE.BIN/
 # nextflow analysis folders/files
 /test_data/*
 !/test_data/createTestData.sh
+!/test_data/Replicate_For_Input_Bag(test).json
 /workflow/.nextflow/*
 /workflow/work/*
 /workflow/output/*
@@ -301,4 +302,4 @@ timeline*.html*
 *_studyRID.csv
 run*.sh
 
-!.gitkeep
+!.gitkeep
\ No newline at end of file

test_data/createTestData.sh

@@ -12,7 +12,7 @@ mkdir -p NEW_test_data
 ln -sfn ./test_data/auth/credential.json ~/.deriva/credential.json
 
 mkdir -p ./NEW_test_data/bag
-singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-download-cli staging.gudmap.org --catalog 2 '../workflow/conf/Replicate_For_Input_Bag(test).json' . rid=Q-Y5F6
+singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-download-cli staging.gudmap.org --catalog 2 './Replicate_For_Input_Bag(test).json' . rid=Q-Y5F6
 cp Q-Y5F6_inputBag.zip ./NEW_test_data/bag/Q-Y5F6_inputBag_xxxxxxxx.zip
 singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-download-cli staging.gudmap.org --catalog 2 ../workflow/conf/Replicate_For_Input_Bag.json . rid=Q-Y5F6