Commits · 92edc38fd8246ff63380458fd8e14b3ea5203bb7 · GUDMAP_RBK / RNA-seq

Jul 14, 2020
- Add runtime info · 92edc38f
  Gervaise Henry authored 4 years ago
  
  92edc38f
- Add unsorted deduped bam to test_data creation · 7afd0f5e
  Gervaise Henry authored 4 years ago
  
  7afd0f5e
- Fix new CI unit tests · 3da0fb06
  Gervaise Henry authored 4 years ago
  
  3da0fb06
- Add script to create test data · 5f257a20
  Gervaise Henry authored 4 years ago
  
  5f257a20
- Update CI unit tests to use repRID Q-Y5F6 · 3301ebb4
  Gervaise Henry authored 4 years ago
  
  3301ebb4
- Add unit test run for all mea parseta parsed · 83618d9a
  Gervaise Henry authored 4 years ago
  
  83618d9a
May 20, 2020
- Fix cp error for fastq names with multiple R1/2 · 0c3d1a1e
  Gervaise Henry authored 4 years ago
  
  0c3d1a1e
May 13, 2020
- Stage experiment settings as ExperimentSettings.csv to prevent bash error · ea8a2c38
  Gervaise Henry authored 4 years ago
  
  ea8a2c38
May 11, 2020
- Add source param for getBag #50 · a36c189e
  Gervaise Henry authored 4 years ago
  
  a36c189e
May 06, 2020
- Fix fastq output name fix · 178ac5c0
  Gervaise Henry authored 4 years ago
  
  178ac5c0
- Fix fastq output name · 77800005
  Gervaise Henry authored 4 years ago
  
  77800005
- Generalize destination filename for fastq qxtraction · a3839184
  Gervaise Henry authored 4 years ago
  
  a3839184
- Generalize find fastq after fetch · c02d977a
  Gervaise Henry authored 4 years ago
  
  c02d977a
May 05, 2020
- Change to staging.gudmap.org · ebab7cd7
  Gervaise Henry authored 4 years ago
  
  ebab7cd7
May 04, 2020
- Change fetched fastq's mv to cv... mv was truncating some files · 0c0407f9
  Gervaise Henry authored 4 years ago
  
  0c0407f9
May 02, 2020
- Fix getData · 5e322c79
  Gervaise Henry authored 4 years ago
  
  5e322c79
- Fix multiqc output · ae564dba
  Gervaise Henry authored 4 years ago
  
  ae564dba
- Harmonize outputs, add multiqc output · 28cbd1f8
  Gervaise Henry authored 4 years ago
  
  28cbd1f8
- Harmonize logs · 85392b62
  Gervaise Henry authored 4 years ago
  
  85392b62
- Harmonize process logs (remove excess) · 558e7e78
  Gervaise Henry authored 4 years ago
  
  558e7e78
- Harmonize process comments · 76bc47cd
  Gervaise Henry authored 4 years ago
  
  76bc47cd
- Harmonize in script comments · 81a24580
  Gervaise Henry authored 4 years ago
  
  81a24580
- Fix featureCounts · a37b535c
  Gervaise Henry authored 4 years ago
  
  a37b535c
- Fix stranded inference logic · de145b80
  Gervaise Henry authored 4 years ago
  
  de145b80
- Fix floating point errors · c17649ed
  Gervaise Henry authored 4 years ago
  
  c17649ed
May 01, 2020
- Fix SE alignSampleSummary output name · e52bb115
  Gervaise Henry authored 4 years ago
  
  e52bb115
- Fix SE downsample output optional · a697e78b
  Gervaise Henry authored 4 years ago
  
  a697e78b
- Fix report order · 608bc755
  Gervaise Henry authored 4 years ago
  
  608bc755
- Add experiment and study rid's to multiqc report · 8c2c17a2
  Gervaise Henry authored 4 years ago
  
  8c2c17a2
- Add metadata and repRID to multiqc report · 3bc88431
  Gervaise Henry authored 4 years ago
  
  3bc88431
Apr 30, 2020
- Merge branch 'develop' into '10-process.aggregateQC' · fcb04ee7
  Gervaise Henry authored 4 years ago
```
Develop

See merge request !32
```
  fcb04ee7
- Add all reports(except metadata) · 4e0779da
  Gervaise Henry authored 4 years ago
  
  4e0779da
Apr 27, 2020
- Fix next line in trackStart · 0fee5c77
  Gervaise Henry authored 4 years ago
  
  0fee5c77
- Fix repRID in trackStart · f57fba59
  Gervaise Henry authored 4 years ago
  
  f57fba59
- Add quotes to repRID in trackStart · 33011d74
  Gervaise Henry authored 4 years ago
  
  33011d74
- Fix trackStart · 8ab3986d
  Gervaise Henry authored 4 years ago
  
  8ab3986d
- Merge branch 'develop' into '10-process.aggregateQC' · c99833c4
  Gervaise Henry authored 4 years ago
```
Develop

See merge request !31
```
  c99833c4
- Merge branch 'track.pipeline' into 'develop' · b855a1fe
  Gervaise Henry authored 4 years ago
```
Add extra params for tracking

See merge request !30
```
  b855a1fe
- Add extra params for tracking · 07f3c00e
  Gervaise Henry authored 4 years ago
  
  07f3c00e
Apr 25, 2020
- Merge branch 'track.pipeline' into 'develop' · 0993c872
  Gervaise Henry authored 4 years ago
```
Track.pipeline

See merge request !29
```
  0993c872