Commits · 579959d88cdf9897d5597ff1d78aebe2b7c24e73 · GUDMAP_RBK / RNA-seq · GitLab

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Aug 25, 2020
- Add fastq override #71 · 5f48c1c1
  Gervaise Henry authored 4 years ago
  
  5f48c1c1
- Add CI test for inputBag override · d7b22a9f
  Gervaise Henry authored 4 years ago
  
  d7b22a9f
Aug 24, 2020
- Update unit test for count #73 · 2773df4c
  Gervaise Henry authored 4 years ago
  
  2773df4c
- Update unit test for count #73 · 6e4ad752
  Gervaise Henry authored 4 years ago
  
  6e4ad752
- Update unit test for count #73 · c8889b07
  Gervaise Henry authored 4 years ago
  
  c8889b07
- Update unit test for count #73 · 4a6611d6
  Gervaise Henry authored 4 years ago
  
  4a6611d6
Aug 13, 2020
- Remove parallelization of trim_galore · 7bcdead3
  Gervaise Henry authored 4 years ago
  
  7bcdead3
- Change unit test for trim to match new setting · b86fdcca
  Gervaise Henry authored 4 years ago
  
  b86fdcca
Aug 12, 2020
- Add unit test for outputBag · d65d19ec
  Gervaise Henry authored 4 years ago
  
  d65d19ec
Aug 10, 2020
- Change consistence test from exact match to within 1/100,000 change from expected · ade9acec
  Gervaise Henry authored 4 years ago
  
  ade9acec
Aug 04, 2020
- Fix countData unit summary file name · a9b7c868
  Gervaise Henry authored 4 years ago
  
  a9b7c868
- Fix echo greps · 0eee8782
  Gervaise Henry authored 4 years ago
  
  0eee8782
- Add new metadata extraction to ci · 11a742a3
  Gervaise Henry authored 4 years ago
  
  11a742a3
Aug 03, 2020
- Measure median trimmed read length and display in multiqc table report · d0be69da
  Gervaise Henry authored 4 years ago
  
  d0be69da
- Fix parseMetadata unit test · 67d6d8f4
  Gervaise Henry authored 4 years ago
  
  67d6d8f4
- Move read length num to str to python script · bfaf76ce
  Gervaise Henry authored 4 years ago
  
  bfaf76ce
- Convert num read length to str in bash · b949a3b0
  Gervaise Henry authored 4 years ago
  
  b949a3b0
- Extract read length from submitter metadata · e8b92b99
  Gervaise Henry authored 4 years ago
  
  e8b92b99
Jul 31, 2020
- Move expected assigned into ci.yml #27 · b247d7e4
  Gervaise Henry authored 4 years ago
  
  b247d7e4
- Add consistency tests #27 · 3f55fde3
  Gervaise Henry authored 4 years ago
  
  3f55fde3
- Add -q nextflow flag in ci to test (needs to run code after nextflow) · a0c9fde5
  Gervaise Henry authored 4 years ago
  
  a0c9fde5
- Remove -bg nextflow flag in ci to test · b272565d
  Gervaise Henry authored 4 years ago
  
  b272565d
Jul 30, 2020
- Remove cache dependencies #27 · e76f7aff
  Gervaise Henry authored 4 years ago
  
  e76f7aff
- Fix cache dependencies #27 · b1e53c7d
  Gervaise Henry authored 4 years ago
  
  b1e53c7d
- Setup dummy se conssistency test with cache dependencies · ecc08451
  Gervaise Henry authored 4 years ago
  
  ecc08451
- Add qc outputs from integration tests for consistency tests #27 · 33fd5b4c
  Gervaise Henry authored 4 years ago
  
  33fd5b4c
- Test for pytest for parseMetadata: pass+fail test worked... #54 · ea7ca4ad
  Gervaise Henry authored 4 years ago
  
  ea7ca4ad
- Test for pytest for parseMetadata: supposed to fail #54 · f57f9950
  Gervaise Henry authored 4 years ago
  
  f57f9950
- Test for pytest for parseMetadata: supposed to pass #54 · 7179e4ed
  Gervaise Henry authored 4 years ago
  
  7179e4ed
- Edit dataQC pytest: should fail #48 · e8780f74
  Gervaise Henry authored 4 years ago
  
  e8780f74
- Test for pytest for parseMetadata: supposed to pass #54 · e4b4d6f5
  Gervaise Henry authored 4 years ago
  
  e4b4d6f5
- Test for pytest for parseMetadata: supposed to pass #54 · b7cceb94
  Gervaise Henry authored 4 years ago
  
  b7cceb94
- Test for pytest for parseMetadata: supposed to pass #54 · 0ab26d0d
  Gervaise Henry authored 4 years ago
  
  0ab26d0d
- Fail test for pytest for parseMetadata passed, test pass #54 · 2630f906
  Gervaise Henry authored 4 years ago
  
  2630f906
- Fix pytest for parseMetadata: expect fail #54 · eddf3c14
  Gervaise Henry authored 4 years ago
  
  eddf3c14
- Add pytest for parseMetadata: expect fail #54 · 5c4e2529
  Gervaise Henry authored 4 years ago
  
  5c4e2529
- Fix dataQC unit test: addition worked #48 · b702f897
  Gervaise Henry authored 4 years ago
  
  b702f897
- Test unit test addition for #48 · 419fa8c6
  Gervaise Henry authored 4 years ago
  
  419fa8c6
- Add fastqc commad to unit now that using singularity run · 2c60afce
  Gervaise Henry authored 4 years ago
  
  2c60afce
- Revert fastq unit to singularity run · a70781aa
  Gervaise Henry authored 4 years ago
  
  a70781aa