Commits · 4c1da89179deb7976b3eec2a29f8e0e4dcbf25d8 · GUDMAP_RBK / RNA-seq · GitLab

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Jan 04, 2021
- Pass raw ends · 00ee468b
  Gervaise Henry authored 4 years ago
  
  00ee468b
Dec 29, 2020
- Update consistency test · 5ce63696
  Gervaise Henry authored 4 years ago
  
  5ce63696
- Update inputs and outputs of make feature counts ci unit test match new format · 656bd8b4
  Gervaise Henry authored 4 years ago
  
  656bd8b4
- Revert to old replicate in tests and ci · d19f4244
  Gervaise Henry authored 4 years ago
  
  d19f4244
- Change to new-new test data · 08094d2c
  Gervaise Henry authored 4 years ago
  
  08094d2c
- Update all tests with new test data rep · df3d4788
  Gervaise Henry authored 4 years ago
  
  df3d4788
Dec 28, 2020
- Fix trim ci unit PE file output test · 6c00f35b
  Gervaise Henry authored 4 years ago
  
  6c00f35b
Dec 17, 2020
- Try and fix CI countData · 8ae1644d
  Gervaise Henry authored 4 years ago
  
  8ae1644d
- Check for old mRNA QC and delete catalog entry · 3aa23f2a
  Gervaise Henry authored 4 years ago
  
  3aa23f2a
Nov 11, 2020
- Fix number of reads that map. · 7950f38f
  Venkat Malladi authored 4 years ago
  
  7950f38f
Nov 10, 2020
- Fix spelling error · c7178e06
  Venkat Malladi authored 4 years ago
  
  c7178e06
- Fix parsing of json file. · 4a5ac4a9
  Venkat Malladi authored 4 years ago
  
  4a5ac4a9
- Fix consistency check for where it is grabbing. · ded770b2
  Venkat Malladi authored 4 years ago
  
  ded770b2
Oct 31, 2020
- Update consistency checks to be fully in python. · 10cbf01b
  Venkat Malladi authored 4 years ago
  
  10cbf01b
Sep 14, 2020
- Auto pep8'd all python code · 2ec44620
  Gervaise Henry authored 4 years ago
  
  2ec44620
Aug 24, 2020
- Update unit test for count #73 · 6e4ad752
  Gervaise Henry authored 4 years ago
  
  6e4ad752
Aug 12, 2020
- Add unit test for outputBag · d65d19ec
  Gervaise Henry authored 4 years ago
  
  d65d19ec
Aug 10, 2020
- Convert string to int for range checking in consistency test · 6341ca53
  Gervaise Henry authored 4 years ago
  
  6341ca53
- Change consistence test from exact match to within 1/100,000 change from expected · ade9acec
  Gervaise Henry authored 4 years ago
  
  ade9acec
Aug 03, 2020
- Extract read length from submitter metadata · e8b92b99
  Gervaise Henry authored 4 years ago
  
  e8b92b99
Jul 31, 2020
- Fix consistency module #27 · 4539dba1
  Gervaise Henry authored 4 years ago
  
  4539dba1
- Move expected assigned into ci.yml #27 · b247d7e4
  Gervaise Henry authored 4 years ago
  
  b247d7e4
- Add consistency tests #27 · 3f55fde3
  Gervaise Henry authored 4 years ago
  
  3f55fde3
Jul 30, 2020
- Test for pytest for parseMetadata: remove unnecessary print #54 · d7b38e88
  Gervaise Henry authored 4 years ago
  
  d7b38e88
- Test for pytest for parseMetadata: supposed to pass #54 · 6fe96e00
  Gervaise Henry authored 4 years ago
  
  6fe96e00
- Test for pytest for parseMetadata: supposed to pass #54 · 22fbaf52
  Gervaise Henry authored 4 years ago
  
  22fbaf52
- Test for pytest for parseMetadata: force pass #54 · 729ee825
  Gervaise Henry authored 4 years ago
  
  729ee825
- Test for pytest for parseMetadata: force pass #54 · 50df04d1
  Gervaise Henry authored 4 years ago
  
  50df04d1
- Test for pytest for parseMetadata: supposed to pass #54 · 32f281b4
  Gervaise Henry authored 4 years ago
  
  32f281b4
- Test for pytest for parseMetadata: supposed to pass #54 · 7179e4ed
  Gervaise Henry authored 4 years ago
  
  7179e4ed
- Edit dataQC pytest: should pass #48 · 979e6af4
  Gervaise Henry authored 4 years ago
  
  979e6af4
- Test for pytest for parseMetadata: supposed to pass #54 · 042e9177
  Gervaise Henry authored 4 years ago
  
  042e9177
- Print output of parseMetadata pytest read · fe544976
  Gervaise Henry authored 4 years ago
  
  fe544976
- Print output of parseMetadata pytest read · 95aa209b
  Gervaise Henry authored 4 years ago
  
  95aa209b
- Test for pytest for parseMetadata: supposed to pass #54 · 58415f1c
  Gervaise Henry authored 4 years ago
  
  58415f1c
- Test for pytest for parseMetadata: supposed to pass #54 · dbb02aae
  Gervaise Henry authored 4 years ago
  
  dbb02aae
- Test for pytest for parseMetadata: supposed to pass #54 · 390a9b5d
  Gervaise Henry authored 4 years ago
  
  390a9b5d
- Add pytest for parseMetadata: expect fail #54 · 5c4e2529
  Gervaise Henry authored 4 years ago
  
  5c4e2529
- Add initial trial for dataQC unit improvement #48 · 6ed76f56
  Gervaise Henry authored 4 years ago
  
  6ed76f56
Jul 14, 2020
- Update CI unit tests to use repRID Q-Y5F6 · 3301ebb4
  Gervaise Henry authored 4 years ago
  
  3301ebb4