Commits · 466e814a50d679348947e9191c6b441d46a07653 · GUDMAP_RBK / RNA-seq

Feb 13, 2021
- Link deriva credentials for upload processed files and fix logs · 466e814a
  Gervaise Henry authored 4 years ago
  
  466e814a
- Link deriva credentials for upload input/output bags · 9fd3eb5a
  Gervaise Henry authored 4 years ago
  
  9fd3eb5a
Feb 12, 2021
- Move fastq count before cp · 821a0f05
  Gervaise Henry authored 4 years ago
  
  821a0f05
- Change bdbag to use cookie locally · 785c4858
  Gervaise Henry authored 4 years ago
  
  785c4858
- Change symlink to cp for cookie in getData · 3324d1ea
  Gervaise Henry authored 4 years ago
  
  3324d1ea
- Try removing stage-as from getData · 63509f78
  Gervaise Henry authored 4 years ago
  
  63509f78
- Add quotes around find predicate · 36fc4229
  Gervaise Henry authored 4 years ago
  
  36fc4229
- Convert ls to find · bdbe616f
  Gervaise Henry authored 4 years ago
  
  bdbe616f
- Fix input folders to match nf being in base · ede40613
  Gervaise Henry authored 4 years ago
  
  ede40613
- Fix zip name · c630b961
  Gervaise Henry authored 4 years ago
  
  c630b961
- Use predicted name of inputBag zip instead of using ls · ded9c3a1
  Gervaise Henry authored 4 years ago
  
  ded9c3a1
- Remove docker prefix · 24e74af8
  Gervaise Henry authored 4 years ago
  
  24e74af8
- Change containers for dnanexus to have prefix docker:// · 7ba3c17a
  Gervaise Henry authored 4 years ago
  
  7ba3c17a
- Change dnanexus executor · 23ed57ea
  Gervaise Henry authored 4 years ago
  
  23ed57ea
- Add dummy main.nf · e96d1001
  Gervaise Henry authored 4 years ago
  
  e96d1001
Feb 11, 2021
- Fix nf filename · c8a7a5a9
  Gervaise Henry authored 4 years ago
  
  c8a7a5a9
- Nextflow-ify · 28a9d3ff
  Gervaise Henry authored 4 years ago
  
  28a9d3ff
- Nextflow-ify · 0a4b00a6
  Gervaise Henry authored 4 years ago
  
  0a4b00a6
Feb 10, 2021
- Add local configs · 76775df8
  Gervaise Henry authored 4 years ago
  
  76775df8
- Fix datahub ref download · 9d37cf2a
  Gervaise Henry authored 4 years ago
  
  9d37cf2a
Feb 09, 2021
- Add dnanexus configs · ec4e0c7e
  Gervaise Henry authored 4 years ago
  
  ec4e0c7e
Feb 07, 2021
- Merge branch '118-error.status.detail' into 'develop' · 296454d1
  Venkat Malladi authored 4 years ago
```
Fix

Closes #118

See merge request !69
```
  296454d1
Feb 04, 2021
- Update changelog · 5056f2a6
  Gervaise Henry authored 4 years ago
  
  5056f2a6
- Fix · b507ecd7
  Gervaise Henry authored 4 years ago
  
  b507ecd7
Feb 01, 2021

Merge branch '110-SE' into 'develop' · fca601e4

Venkat Malladi authored 4 years ago

Resolve "Change Single Read to Single End for submitted endness"

Closes #95, #100, #112, #111, #70, #115, #114, and #110

See merge request !67

v2.0.0rc01

fca601e4

Jan 29, 2021
- Correct reference var name · 9cccaef7
  Gervaise Henry authored 4 years ago
  
  9cccaef7
- Fix bool spike override in getRef · 3235c1c4
  Gervaise Henry authored 4 years ago
  
  3235c1c4
- Change spike override to true/false · 04dbe532
  Gervaise Henry authored 4 years ago
  
  04dbe532
- Update dag · 762f3ba7
  Gervaise Henry authored 4 years ago
  
  762f3ba7
- Fix getRef for spike · ced21083
  Gervaise Henry authored 4 years ago
  
  ced21083
Jan 28, 2021
- Move spike/stranded override to infer (like species), not submitter · 0bb07de4
  Gervaise Henry authored 4 years ago
  
  0bb07de4
- Fix spike override ci pytest · f36d728b
  Gervaise Henry authored 4 years ago
  
  f36d728b
- Convert blank nan submitted metadata to No value · 37a1345e
  Gervaise Henry authored 4 years ago
  
  37a1345e
- Update version to 2.0.0rc01 · 6961db25
  Gervaise Henry authored 4 years ago
  
  6961db25
- Add multiqc html to ci artifacts for override tests · 8859d7e9
  Gervaise Henry authored 4 years ago
  
  8859d7e9
- Try excaping tabs for metadata override for report · b1cdf286
  Gervaise Henry authored 4 years ago
  
  b1cdf286
- Update DAG · a7d4aa13
  Gervaise Henry authored 4 years ago
  
  a7d4aa13
- Fix metadata echo · 329dc950
  Gervaise Henry authored 4 years ago
  
  329dc950
- Fix spike override test · 63fbe5e4
  Gervaise Henry authored 4 years ago
  
  63fbe5e4
Jan 27, 2021
- Change replicates for metadata overrides · 2ddefb95
  Gervaise Henry authored 4 years ago
  
  2ddefb95