Commits · 192da4d6f3f8d3d50455d0abbaa99426b4681750 · GUDMAP_RBK / RNA-seq

Nov 09, 2020
- Fix regex markdups. · 192da4d6
  Venkat Malladi authored 4 years ago
  
  192da4d6
- Fix regex. · 61468bd9
  Venkat Malladi authored 4 years ago
  
  61468bd9
- Change patterns and changelong. · acc08c89
  Venkat Malladi authored 4 years ago
  
  acc08c89
- Bypass markdups exit status of 1. · 0daf719e
  Venkat Malladi authored 4 years ago
  
  0daf719e
- Remove markdups version to see why it fails. · 5781d27b
  Venkat Malladi authored 4 years ago
  
  5781d27b
- try version again. · 4b16d9e3
  Venkat Malladi authored 4 years ago
  
  4b16d9e3
- try version again. · c415b314
  Venkat Malladi authored 4 years ago
  
  c415b314
- Update Markdups. · 435f3889
  Venkat Malladi authored 4 years ago
  
  435f3889
- Fix output for vrsion of nextflow pipeline. · 9763c0a7
  Venkat Malladi authored 4 years ago
  
  9763c0a7
- Fix output file for versions. · be7ae1f2
  Venkat Malladi authored 4 years ago
  
  be7ae1f2
- Move to the end. · bc30e5ce
  Venkat Malladi authored 4 years ago
  
  bc30e5ce
- remove jar version. · b724942b
  Venkat Malladi authored 4 years ago
  
  b724942b
- remove seqtk and update output for stdout. · 08c58f6f
  Venkat Malladi authored 4 years ago
  
  08c58f6f
- Fix test stage name. · 482fd80d
  Venkat Malladi authored 4 years ago
  
  482fd80d
- Add in software versions and references. · 10cd6a4c
  Venkat Malladi authored 4 years ago
  
  10cd6a4c
Sep 20, 2020
- Reduce species inference cutoffs · c114a629
  Gervaise Henry authored 4 years ago
  
  0.0.4_indev
  
  c114a629
Sep 14, 2020
- Merge branch '23-ref.to.datahub' into 'develop' · f0100c48
  Venkat Malladi authored 4 years ago
```
Resolve "Move references to GUDMAP/RBK"

Closes #23

See merge request !45
```
  f0100c48
- Update docs/dag.png · bfc0f444
  Gervaise Henry authored 4 years ago
  
  bfc0f444
- Fix elif · deabc9e6
  Gervaise Henry authored 4 years ago
  
  deabc9e6
- Fix datahub specific bed folder move · cb073c1e
  Gervaise Henry authored 4 years ago
  
  cb073c1e
- Auto pep8'd all python code · 2ec44620
  Gervaise Henry authored 4 years ago
  
  2ec44620
- Update changelog · b2f6e30d
  Gervaise Henry authored 4 years ago
  
  b2f6e30d
- Fix ref move after getRef datahub pull · 296ee453
  Gervaise Henry authored 4 years ago
  
  296ee453
- Update docs · c8a7ab57
  Gervaise Henry authored 4 years ago
  
  c8a7ab57
- Add refName to getRef · 719bd9f5
  Gervaise Henry authored 4 years ago
  
  719bd9f5
Sep 13, 2020
- Fix pulled ref mv · b25ebe4e
  Gervaise Henry authored 4 years ago
  
  b25ebe4e
- Move bed only on non ERCC · af4b5d04
  Gervaise Henry authored 4 years ago
  
  af4b5d04
- Add search for ERCC ref · 778044bc
  Gervaise Henry authored 4 years ago
  
  778044bc
- Combine inputs for getRefInfer · b123b09a
  Gervaise Henry authored 4 years ago
  
  b123b09a
- Remove collect for getRefInfer · fe197fce
  Gervaise Henry authored 4 years ago
  
  fe197fce
- Use channel · 7a0560f5
  Gervaise Henry authored 4 years ago
  
  7a0560f5
- Add extractRefData.py as channel · 42048773
  Gervaise Henry authored 4 years ago
  
  42048773
- Revert each · 8795d7f5
  Gervaise Henry authored 4 years ago
  
  8795d7f5
- Try each refInfer · c8ce8d74
  Gervaise Henry authored 4 years ago
  
  c8ce8d74
- Fix curl query · 8a236b73
  Gervaise Henry authored 4 years ago
  
  8a236b73
- Add refSource to param table · f0cf62ed
  Gervaise Henry authored 4 years ago
  
  f0cf62ed
- Add deriva auth to getRef · 9de3a949
  Gervaise Henry authored 4 years ago
  
  9de3a949
- Update datahub ref download · 2f239170
  Gervaise Henry authored 4 years ago
  
  2f239170
- Update deriva and python containers in config · accde9b7
  Gervaise Henry authored 4 years ago
  
  accde9b7
- Add datahub fetch for pipeline · 6ff4315b
  Gervaise Henry authored 4 years ago
  
  6ff4315b