Commits · 10cc87d90710bb9659c81d3e825381649a36f3b5 · GUDMAP_RBK / RNA-seq

Dec 17, 2020
- Start changing model · 8792bf4b
  Gervaise Henry authored 4 years ago
  
  8792bf4b
Dec 14, 2020
- Add Output Bag · bdfd5567
  Gervaise Henry authored 4 years ago
  
  bdfd5567
Dec 07, 2020
- Add upload output bag · ab0e4bb6
  Gervaise Henry authored 4 years ago
  
  ab0e4bb6
Dec 05, 2020
- Add upload mRNA QC · e4b99530
  Gervaise Henry authored 4 years ago
  
  e4b99530
Dec 02, 2020
- Add upload execution run · 62790800
  Gervaise Henry authored 4 years ago
  
  62790800
Nov 30, 2020
- Add uploadInputBag · eb83dee4
  Gervaise Henry authored 4 years ago
  
  eb83dee4
Nov 10, 2020
- Fix custom report names for ordering · fb18e579
  Gervaise Henry authored 4 years ago
  
  fb18e579
- Try to get software references working · df529e22
  Gervaise Henry authored 4 years ago
  
  df529e22
- Test software version/references multiqc custom report ordering · 28f53e77
  Gervaise Henry authored 4 years ago
  
  28f53e77
- Try to fix order. · 8eb6c76d
  Venkat Malladi authored 4 years ago
  
  8eb6c76d
- Update DAG, links and order of sections. · b20d758a
  Venkat Malladi authored 4 years ago
  
  b20d758a
Nov 09, 2020
- Add in software versions and references. · 10cd6a4c
  Venkat Malladi authored 4 years ago
  
  10cd6a4c
Sep 13, 2020
- Update datahub ref download · 2f239170
  Gervaise Henry authored 4 years ago
  
  2f239170
Sep 09, 2020
- Add param for ref source · 45593829
  Gervaise Henry authored 4 years ago
  
  45593829
Aug 26, 2020
- Add species override · 03e05d4c
  Gervaise Henry authored 4 years ago
  
  03e05d4c
Aug 25, 2020
- Update multiqc run table for reporting convenience #72 · 579959d8
  Gervaise Henry authored 4 years ago
  
  579959d8
Aug 24, 2020
- Add new custom tables to multiqc #72 · 79f7c244
  Gervaise Henry authored 4 years ago
  
  79f7c244
Aug 13, 2020
- Run getData on super · 2ed81fb6
  Gervaise Henry authored 4 years ago
  
  2ed81fb6
- Fix getRefs to use super · 8ea08743
  Gervaise Henry authored 4 years ago
  
  8ea08743
- Run all getRefs on super (runniung by study overutilizes local) · 4c9dff21
  Gervaise Henry authored 4 years ago
  
  4c9dff21
Aug 12, 2020
- Add inital output bag creation · 49e3be49
  Gervaise Henry authored 4 years ago
  
  49e3be49
Aug 07, 2020
- Add rounding to numbers in multiqc table · 8dd59f38
  Gervaise Henry authored 4 years ago
  
  8dd59f38
Aug 06, 2020
- Fix tin table in multiqc · 66da5252
  Gervaise Henry authored 4 years ago
  
  66da5252
- Remove quotes and colons from multiqc custom tables · e0b3d4bd
  Gervaise Henry authored 4 years ago
  
  e0b3d4bd
- Add quotes to multiqc tables · be4bafc9
  Gervaise Henry authored 4 years ago
  
  be4bafc9
Aug 05, 2020
- Extract raw reads · fa11871a
  Gervaise Henry authored 4 years ago
  
  fa11871a
- Remove number formats from multiqc config · 72e1e94b
  Gervaise Henry authored 4 years ago
  
  72e1e94b
Aug 04, 2020
- Extract assigned reads count · 788a539f
  Gervaise Henry authored 4 years ago
  
  788a539f
- Round median TIN to 2 dp · 740d2eff
  Gervaise Henry authored 4 years ago
  
  740d2eff
Aug 03, 2020
- Calculate median TIN and display in report · 5e2e8f64
  Gervaise Henry authored 4 years ago
  
  5e2e8f64
Jul 23, 2020
- AWS Batch works · 9fe16dfb
  Gervaise Henry authored 4 years ago
  
  9fe16dfb
May 01, 2020
- Fix report order · 608bc755
  Gervaise Henry authored 4 years ago
  
  608bc755
- Add metadata and repRID to multiqc report · 3bc88431
  Gervaise Henry authored 4 years ago
  
  3bc88431
Apr 30, 2020
- Add all reports(except metadata) · 4e0779da
  Gervaise Henry authored 4 years ago
  
  4e0779da
Apr 25, 2020
- Change pipeline tracking to curl · ef4ac234
  Gervaise Henry authored 4 years ago
  
  ef4ac234
Apr 22, 2020
- Remove processes from AWS configs · 170b0706
  Gervaise Henry authored 4 years ago
  
  170b0706
- Add inference and apply new naming standards · 53c34278
  Gervaise Henry authored 4 years ago
  
  53c34278
Apr 07, 2020
- Add align sampled data · 2b89cc74
  Gervaise Henry authored 4 years ago
  
  2b89cc74
- Fix nextflow/runner error, change singularity cache, and limit processes in unit ci to 20 · c0adecfd
  Gervaise Henry authored 4 years ago
  
  c0adecfd
Mar 24, 2020
- Add dowsampling trimmed fastqs · 3b4d0255
  Gervaise Henry authored 5 years ago
  
  3b4d0255