Commits · 0b6630da05b107e7760de3f788f44f8a38fbe5a1 · GUDMAP_RBK / RNA-seq · GitLab

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Jul 31, 2020
- Merge branch 'ci' into 'develop' · 0b6630da
  Gervaise Henry authored 4 years ago
```
Ci

Closes #54, #48, and #27

See merge request !35
```
  0b6630da
- Fix consistency module #27 · 4539dba1
  Gervaise Henry authored 4 years ago
  
  4539dba1
- Move expected assigned into ci.yml #27 · b247d7e4
  Gervaise Henry authored 4 years ago
  
  b247d7e4
- Add consistency tests #27 · 3f55fde3
  Gervaise Henry authored 4 years ago
  
  3f55fde3
- Add -q nextflow flag in ci to test (needs to run code after nextflow) · a0c9fde5
  Gervaise Henry authored 4 years ago
  
  a0c9fde5
- Remove -bg nextflow flag in ci to test · b272565d
  Gervaise Henry authored 4 years ago
  
  b272565d
Jul 30, 2020
- Remove cache dependencies #27 · e76f7aff
  Gervaise Henry authored 4 years ago
  
  e76f7aff
- Fix cache dependencies #27 · b1e53c7d
  Gervaise Henry authored 4 years ago
  
  b1e53c7d
- Setup dummy se conssistency test with cache dependencies · ecc08451
  Gervaise Henry authored 4 years ago
  
  ecc08451
- Add qc outputs from integration tests for consistency tests #27 · 33fd5b4c
  Gervaise Henry authored 4 years ago
  
  33fd5b4c
- Test for pytest for parseMetadata: remove unnecessary print #54 · d7b38e88
  Gervaise Henry authored 4 years ago
  
  d7b38e88
- Test for pytest for parseMetadata: pass+fail test worked... #54 · ea7ca4ad
  Gervaise Henry authored 4 years ago
  
  ea7ca4ad
- Test for pytest for parseMetadata: supposed to fail #54 · f57f9950
  Gervaise Henry authored 4 years ago
  
  f57f9950
- Test for pytest for parseMetadata: supposed to pass #54 · 6fe96e00
  Gervaise Henry authored 4 years ago
  
  6fe96e00
- Test for pytest for parseMetadata: supposed to pass #54 · 22fbaf52
  Gervaise Henry authored 4 years ago
  
  22fbaf52
- Test for pytest for parseMetadata: force pass #54 · 729ee825
  Gervaise Henry authored 4 years ago
  
  729ee825
- Test for pytest for parseMetadata: force pass #54 · 50df04d1
  Gervaise Henry authored 4 years ago
  
  50df04d1
- Test for pytest for parseMetadata: supposed to pass #54 · 32f281b4
  Gervaise Henry authored 4 years ago
  
  32f281b4
- Test for pytest for parseMetadata: supposed to pass #54 · 7179e4ed
  Gervaise Henry authored 4 years ago
  
  7179e4ed
- Edit dataQC pytest: should fail #48 · e8780f74
  Gervaise Henry authored 4 years ago
  
  e8780f74
- Edit dataQC pytest: should pass #48 · 979e6af4
  Gervaise Henry authored 4 years ago
  
  979e6af4
- Test for pytest for parseMetadata: supposed to pass #54 · 042e9177
  Gervaise Henry authored 4 years ago
  
  042e9177
- Print output of parseMetadata pytest read · fe544976
  Gervaise Henry authored 4 years ago
  
  fe544976
- Print output of parseMetadata pytest read · 95aa209b
  Gervaise Henry authored 4 years ago
  
  95aa209b
- Test for pytest for parseMetadata: supposed to pass #54 · 58415f1c
  Gervaise Henry authored 4 years ago
  
  58415f1c
- Test for pytest for parseMetadata: supposed to pass #54 · dbb02aae
  Gervaise Henry authored 4 years ago
  
  dbb02aae
- Test for pytest for parseMetadata: supposed to pass #54 · 390a9b5d
  Gervaise Henry authored 4 years ago
  
  390a9b5d
- Test for pytest for parseMetadata: supposed to pass #54 · e4b4d6f5
  Gervaise Henry authored 4 years ago
  
  e4b4d6f5
- Test for pytest for parseMetadata: supposed to pass #54 · b7cceb94
  Gervaise Henry authored 4 years ago
  
  b7cceb94
- Test for pytest for parseMetadata: supposed to pass #54 · 0ab26d0d
  Gervaise Henry authored 4 years ago
  
  0ab26d0d
- Fail test for pytest for parseMetadata passed, test pass #54 · 2630f906
  Gervaise Henry authored 4 years ago
  
  2630f906
- Fix pytest for parseMetadata: expect fail #54 · eddf3c14
  Gervaise Henry authored 4 years ago
  
  eddf3c14
- Add pytest for parseMetadata: expect fail #54 · 5c4e2529
  Gervaise Henry authored 4 years ago
  
  5c4e2529
- Fix dataQC unit test: addition worked #48 · b702f897
  Gervaise Henry authored 4 years ago
  
  b702f897
- Test unit test addition for #48 · 419fa8c6
  Gervaise Henry authored 4 years ago
  
  419fa8c6
- Add initial trial for dataQC unit improvement #48 · 6ed76f56
  Gervaise Henry authored 4 years ago
  
  6ed76f56
- Merge branch 'aws.batch' into 'develop' · fa5e0d39
  Venkat Malladi authored 4 years ago
```
aws.batch

See merge request !34
```
  fa5e0d39
- Add back trackStart process · d691c1cf
  Gervaise Henry authored 4 years ago
  
  d691c1cf
- Update merge request template · 79306a34
  Gervaise Henry authored 4 years ago
  
  79306a34
- Update dag · 7946823f
  Gervaise Henry authored 4 years ago
  
  7946823f