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Commit d1fd2bec authored by Gervaise Henry's avatar Gervaise Henry 🤠
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Try to fix cache dir

parent 8e0c03c1
2 merge requests!76Develop,!71Seqwho
Pipeline #9424 canceled with stages
in 1 minute and 11 seconds
...@@ -2,7 +2,7 @@ before_script: ...@@ -2,7 +2,7 @@ before_script:
- module load python/3.6.4-anaconda - module load python/3.6.4-anaconda
- pip install --user attrs==20.3.0 pytest==6.2.2 pytest-pythonpath==0.7.3 pytest-cov==2.11.1 - pip install --user attrs==20.3.0 pytest==6.2.2 pytest-pythonpath==0.7.3 pytest-cov==2.11.1
- module load singularity/3.5.3 - module load singularity/3.5.3
- export SINGULARITY_CACHEDIR=${dir} - export SINGULARITY_CACHEDIR=${dir}/cache/
- module load nextflow/20.01.0 - module load nextflow/20.01.0
- ln -sfn /project/BICF/BICF_Core/shared/gudmap/test_data/* ./test_data/ - ln -sfn /project/BICF/BICF_Core/shared/gudmap/test_data/* ./test_data/
- mkdir -p ~/.deriva - mkdir -p ~/.deriva
...@@ -15,7 +15,7 @@ variables: ...@@ -15,7 +15,7 @@ variables:
refMoVersion: "38.p6.vM25" refMoVersion: "38.p6.vM25"
refHuVersion: "38.p13.v36" refHuVersion: "38.p13.v36"
refERCCVersion: "92" refERCCVersion: "92"
dir: "/project/BICF/BICF_Core/shared/gudmap/singularity_cache/cache" dir: "/project/BICF/BICF_Core/shared/gudmap/singularity_cache/"
stages: stages:
- singularity - singularity
......
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