diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index c27662de7e45d49adaeb286ef4ae2bdd151921eb..9a2639c83d751e5bb733c8fb09dbf4651d05bcdd 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -2,7 +2,7 @@ before_script: - module load python/3.6.4-anaconda - pip install --user attrs==20.3.0 pytest==6.2.2 pytest-pythonpath==0.7.3 pytest-cov==2.11.1 - module load singularity/3.5.3 - - export SINGULARITY_CACHEDIR=${dir} + - export SINGULARITY_CACHEDIR=${dir}/cache/ - module load nextflow/20.01.0 - ln -sfn /project/BICF/BICF_Core/shared/gudmap/test_data/* ./test_data/ - mkdir -p ~/.deriva @@ -15,7 +15,7 @@ variables: refMoVersion: "38.p6.vM25" refHuVersion: "38.p13.v36" refERCCVersion: "92" - dir: "/project/BICF/BICF_Core/shared/gudmap/singularity_cache/cache" + dir: "/project/BICF/BICF_Core/shared/gudmap/singularity_cache/" stages: - singularity