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Commit 9e121dac authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Make sampled align use > 32GB nodes on BioHPC

parent e7c65fea
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2 merge requests!65Develop,!64Resolve "samtools sort: couldn't allocate memory for bam_mem"
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CHANGELOG.md
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...@@ -13,6 +13,7 @@ ...@@ -13,6 +13,7 @@
* Handle blank submitted endness better * Handle blank submitted endness better
* Don't use file.csv from inputBag to parse manual endness, use counted from getData * Don't use file.csv from inputBag to parse manual endness, use counted from getData
* Detect malformed fastq's (#107) * Detect malformed fastq's (#107)
* Restrict sampled alignment process to use >32GB nodes on BioHPC
*Known Bugs* *Known Bugs*
* Override params (inputBag, fastq, species) aren't checked for integrity * Override params (inputBag, fastq, species) aren't checked for integrity
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workflow/conf/biohpc.config
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...@@ -32,7 +32,7 @@ process { ...@@ -32,7 +32,7 @@ process {
executor = 'local' executor = 'local'
} }
withName:alignSampleData { withName:alignSampleData {
queue = 'super' queue = '128GB,256GB,256GBv1,384GB'
} }
withName:inferMetadata { withName:inferMetadata {
queue = 'super' queue = 'super'
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