From 9e121dac9d5dd05fb90b2d4a5309fca6b9ad518a Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 20 Jan 2021 10:00:27 -0600
Subject: [PATCH] Make sampled align use > 32GB nodes on BioHPC
---
CHANGELOG.md | 1 +
workflow/conf/biohpc.config | 2 +-
2 files changed, 2 insertions(+), 1 deletion(-)
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 310f086..761a706 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -13,6 +13,7 @@
* Handle blank submitted endness better
* Don't use file.csv from inputBag to parse manual endness, use counted from getData
* Detect malformed fastq's (#107)
+* Restrict sampled alignment process to use >32GB nodes on BioHPC
*Known Bugs*
* Override params (inputBag, fastq, species) aren't checked for integrity
diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index 27b83b7..cc058df 100755
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -32,7 +32,7 @@ process {
executor = 'local'
}
withName:alignSampleData {
- queue = 'super'
+ queue = '128GB,256GB,256GBv1,384GB'
}
withName:inferMetadata {
queue = 'super'
--
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