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Commit 2d9e2523 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Add retries to all data-hub processes for biohpc config

parent 860af5bd
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2 merge requests!58Develop,!56Resolve "Detect error in inferMetadata for tracking"
Pipeline #8889 passed with stages
in 2 minutes and 38 seconds
...@@ -12,6 +12,8 @@ process { ...@@ -12,6 +12,8 @@ process {
} }
withName:getBag { withName:getBag {
executor = 'local' executor = 'local'
errorStrategy = 'retry'
maxRetries = 1
} }
withName:getData { withName:getData {
queue = 'super' queue = 'super'
...@@ -67,30 +69,44 @@ process { ...@@ -67,30 +69,44 @@ process {
} }
withName:uploadInputBag { withName:uploadInputBag {
executor = 'local' executor = 'local'
errorStrategy = 'retry'
maxRetries = 1
} }
withName:uploadExecutionRun { withName:uploadExecutionRun {
executor = 'local' executor = 'local'
errorStrategy = 'retry'
maxRetries = 1
} }
withName:uploadQC { withName:uploadQC {
executor = 'local' executor = 'local'
} }
withName:uploadProcessedFile { withName:uploadProcessedFile {
executor = 'local' executor = 'local'
errorStrategy = 'retry'
maxRetries = 1
} }
withName:uploadOutputBag { withName:uploadOutputBag {
executor = 'local' executor = 'local'
} }
withName:finalizeExecutionRun { withName:finalizeExecutionRun {
executor = 'local' executor = 'local'
errorStrategy = 'retry'
maxRetries = 1
} }
withName:failPreExecutionRun { withName:failPreExecutionRun {
executor = 'local' executor = 'local'
errorStrategy = 'retry'
maxRetries = 1
} }
withName:failPreExecutionRun { withName:failPreExecutionRun {
executor = 'local' executor = 'local'
errorStrategy = 'retry'
maxRetries = 1
} }
withName:failExecutionRun { withName:failExecutionRun {
executor = 'local' executor = 'local'
errorStrategy = 'retry'
maxRetries = 1
} }
} }
......
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