From 2d9e2523de9c5c4b0b5964928fb02262fb7726c2 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 7 Jan 2021 20:24:26 -0600
Subject: [PATCH] Add retries to all data-hub processes for biohpc config
---
workflow/conf/biohpc.config | 16 ++++++++++++++++
1 file changed, 16 insertions(+)
diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index ae32988..e2d47d2 100755
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -12,6 +12,8 @@ process {
}
withName:getBag {
executor = 'local'
+ errorStrategy = 'retry'
+ maxRetries = 1
}
withName:getData {
queue = 'super'
@@ -67,30 +69,44 @@ process {
}
withName:uploadInputBag {
executor = 'local'
+ errorStrategy = 'retry'
+ maxRetries = 1
}
withName:uploadExecutionRun {
executor = 'local'
+ errorStrategy = 'retry'
+ maxRetries = 1
}
withName:uploadQC {
executor = 'local'
}
withName:uploadProcessedFile {
executor = 'local'
+ errorStrategy = 'retry'
+ maxRetries = 1
}
withName:uploadOutputBag {
executor = 'local'
}
withName:finalizeExecutionRun {
executor = 'local'
+ errorStrategy = 'retry'
+ maxRetries = 1
}
withName:failPreExecutionRun {
executor = 'local'
+ errorStrategy = 'retry'
+ maxRetries = 1
}
withName:failPreExecutionRun {
executor = 'local'
+ errorStrategy = 'retry'
+ maxRetries = 1
}
withName:failExecutionRun {
executor = 'local'
+ errorStrategy = 'retry'
+ maxRetries = 1
}
}
--
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