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Commit 2503d937 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Add fastqc output

parent 8f580cc7
2 merge requests!37v0.0.1,!18Resolve "process_fastqc"
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...@@ -339,6 +339,7 @@ process dedupData { ...@@ -339,6 +339,7 @@ process dedupData {
*/ */
process fastqc { process fastqc {
tag "${repRID}" tag "${repRID}"
publishDir "${outDir}/fastqc", mode: 'copy', pattern: "*_fastqc.zip"
publishDir "${logsDir}", mode: 'copy', pattern: "*.fastq.err" publishDir "${logsDir}", mode: 'copy', pattern: "*.fastq.err"
input: input:
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