From 2503d93738936d112bb2a748012ba29e3496066d Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 3 Feb 2020 21:59:01 -0600
Subject: [PATCH] Add fastqc output
---
workflow/rna-seq.nf | 1 +
1 file changed, 1 insertion(+)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 082e04b..3cb62a5 100755
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -339,6 +339,7 @@ process dedupData {
*/
process fastqc {
tag "${repRID}"
+ publishDir "${outDir}/fastqc", mode: 'copy', pattern: "*_fastqc.zip"
publishDir "${logsDir}", mode: 'copy', pattern: "*.fastq.err"
input:
--
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