diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 082e04b57baf408919002e650454acaa4405751d..3cb62a5e64a72e27221dc89d87b828e02ae9405d 100755
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -339,6 +339,7 @@ process dedupData {
 */
 process fastqc {
   tag "${repRID}"
+  publishDir "${outDir}/fastqc", mode: 'copy', pattern: "*_fastqc.zip"
   publishDir "${logsDir}", mode: 'copy', pattern: "*.fastq.err"
 
   input: