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Commit 0ecf1945 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Remove executor settings in .nf

parent f0d25e3c
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3 merge requests!37v0.0.1,!13Develop,!12Resolve "Make scripts input files for processes"
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workflow/rna-seq.nf
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...@@ -27,7 +27,6 @@ derivaConfig = Channel.fromPath("${baseDir}/conf/replicate_export_config.json") ...@@ -27,7 +27,6 @@ derivaConfig = Channel.fromPath("${baseDir}/conf/replicate_export_config.json")
* getData: get bagit file from consortium * getData: get bagit file from consortium
*/ */
process getBag { process getBag {
executor 'local'
tag "${repRID}" tag "${repRID}"
publishDir "${logsDir}", mode: 'copy', pattern: "${repRID}.getBag.err" publishDir "${logsDir}", mode: 'copy', pattern: "${repRID}.getBag.err"
...@@ -58,7 +57,6 @@ process getData { ...@@ -58,7 +57,6 @@ process getData {
publishDir "${logsDir}", mode: 'copy', pattern: "${repRID}.getData.err" publishDir "${logsDir}", mode: 'copy', pattern: "${repRID}.getData.err"
input: input:
executor 'local'
path cookies, stageAs: 'deriva-cookies.txt' from bdbag path cookies, stageAs: 'deriva-cookies.txt' from bdbag
path bagit path bagit
......
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