diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index bbb5a761548beb19e4cced8dc32debfa104d4334..ab53a41de1f142207cffb2b4feaf464d10185cfc 100755 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -27,7 +27,6 @@ derivaConfig = Channel.fromPath("${baseDir}/conf/replicate_export_config.json") * getData: get bagit file from consortium */ process getBag { - executor 'local' tag "${repRID}" publishDir "${logsDir}", mode: 'copy', pattern: "${repRID}.getBag.err" @@ -58,7 +57,6 @@ process getData { publishDir "${logsDir}", mode: 'copy', pattern: "${repRID}.getData.err" input: - executor 'local' path cookies, stageAs: 'deriva-cookies.txt' from bdbag path bagit