Skip to content
Snippets Groups Projects
Commit 01aaef87 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
Browse files

Allow uploadExexutionRun to happen with pipeline error(metadata match)

parent f9de49f2
2 merge requests!76Develop,!71Seqwho
...@@ -1706,7 +1706,6 @@ pipelineError.into { ...@@ -1706,7 +1706,6 @@ pipelineError.into {
pipelineError_uploadProcessedFile pipelineError_uploadProcessedFile
pipelineError_uploadOutputBag pipelineError_uploadOutputBag
pipelineError_failExecutionRun pipelineError_failExecutionRun
pipelineError_uploadExecutionRun
pipelineError_finalizeExecutionRun pipelineError_finalizeExecutionRun
pipelineError_uploadQC_fail pipelineError_uploadQC_fail
} }
...@@ -2274,14 +2273,13 @@ process uploadExecutionRun { ...@@ -2274,14 +2273,13 @@ process uploadExecutionRun {
val seqtypeError from seqtypeError_uploadExecutionRun val seqtypeError from seqtypeError_uploadExecutionRun
val speciesErrorSeqwho from speciesErrorSeqwho_uploadExecutionRun val speciesErrorSeqwho from speciesErrorSeqwho_uploadExecutionRun
val speciesError from speciesError_uploadExecutionRun val speciesError from speciesError_uploadExecutionRun
val pipelineError from pipelineError_uploadExecutionRun
output: output:
path ("executionRunRID.csv") into executionRunRID_fl path ("executionRunRID.csv") into executionRunRID_fl
when: when:
upload upload
fastqCountError == "false" && fastqReadError == "false" && fastqFileError == "false" && seqtypeError == "false" && speciesErrorSeqwho == "false" && speciesError == "false" && pipelineError == "false" fastqCountError == "false" && fastqReadError == "false" && fastqFileError == "false" && seqtypeError == "false" && speciesErrorSeqwho == "false" && speciesError == "false"
script: script:
""" """
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment