diff --git a/rna-seq.nf b/rna-seq.nf index 379d8a96e7002ed51dc6508335f3155180f8bd28..311b6c34423e300c013fb1fd5a8407b3b4f708dd 100644 --- a/rna-seq.nf +++ b/rna-seq.nf @@ -1706,7 +1706,6 @@ pipelineError.into { pipelineError_uploadProcessedFile pipelineError_uploadOutputBag pipelineError_failExecutionRun - pipelineError_uploadExecutionRun pipelineError_finalizeExecutionRun pipelineError_uploadQC_fail } @@ -2274,14 +2273,13 @@ process uploadExecutionRun { val seqtypeError from seqtypeError_uploadExecutionRun val speciesErrorSeqwho from speciesErrorSeqwho_uploadExecutionRun val speciesError from speciesError_uploadExecutionRun - val pipelineError from pipelineError_uploadExecutionRun output: path ("executionRunRID.csv") into executionRunRID_fl when: upload - fastqCountError == "false" && fastqReadError == "false" && fastqFileError == "false" && seqtypeError == "false" && speciesErrorSeqwho == "false" && speciesError == "false" && pipelineError == "false" + fastqCountError == "false" && fastqReadError == "false" && fastqFileError == "false" && seqtypeError == "false" && speciesErrorSeqwho == "false" && speciesError == "false" script: """